Newest journal articles by subject

Subjects > Biology

Cancer Exosomes Perform Cell-Independent MicroRNA Biogenesis and Promote Tumorigenesis.
S. Melo;H. SugimotoJoyce T. O’ConnellNoritoshi KatoA. VillanuevaA. VidalLe QiuE. VitkinL. PerelmanC. MeloA. LucciC. IvanG. CalinR. Kalluri
Cancer cell Published 2025/08/01

Summary:

This data indicates that RNA Interference and Non-coding RNAs in Surgical Oncology and Experimental Therapeutics, as well as RNA Interference and Non-coding RNAs in Gene Regulation, at the University of Texas MD Anderson Cancer Center are likely to be influenced by each other.

Minimal information for studies of extracellular vesicles (MISEV2023): From basic to advanced approaches
J. Welsh;D. GoberdhanLorraine O’DriscollE. BuzásCherie BlenkironBenedetta BussolatiHoujian CaiDolores Di VizioTom A P DriedonksU. ErdbrüggerJ. Falcón-PerezQ. FuAndrew F. HillMetka LenassiSai Kiang LimMỹ G. MahoneySujata MohantyAndreas MöllerR. NieuwlandTakahiro OchiyaSusmita SahooA. TorrecilhasLei ZhengA. ZijlstraSarah AbuelreichReem BagabasP. BergeseE. BridgesM. BrucaleDylan BurgerRandy P. CarneyEmanuele CocucciFederico ColomboRossella CrescitelliE. HanserA. HarrisNorman J. HaugheyAn HendrixAlexander R IvanovT. Jovanović-TalismanNicole A. Kruh-GarciaVroniqa Ku'ulei-Lyn FaustinoDiego KyburzCecilia LässerKathleen M LennonJ. LötvallAdam L MaddoxE. Martens-UzunovaRachel R. MizenkoLauren A. NewmanA. RidolfiEva RohdeTatu RojalinAndrew RowlandAndras SafticsU. SandauJ. SaugstadFaezeh ShekariSimon SwiftDmitry Ter-OvanesyanJ. TosarZivile UseckaiteF. ValleZoltán VargaEdwin van der PolM. V. van HerwijnenM. WaubenA. WehmanSarah WilliamsA. ZendriniAlan J ZimmermanMakon-Sébastien NJOCKClotilde ThéryKennith W. Witwer
Journal of Extracellular Vesicles Published 2024/02/01

Summary:

The goal of the current document is to provide researchers with an updated snapshot of available approaches and their advantages and limitations for production, separation and characterisation of EVs from multiple sources, including cell culture, body fluids and solid tissues.

Accurate structure prediction of biomolecular interactions with AlphaFold 3
Josh Abramson;Jonas AdlerJack DungerRichard EvansTim GreenA. PritzelOlaf RonnebergerLindsay WillmoreAndrew J BallardJoshua BambrickSebastian BodensteinDavid A EvansChia-Chun HungMichael O’NeillD. ReimanKathryn TunyasuvunakoolZachary WuAkvilė ŽemgulytėEirini ArvanitiCharles BeattieOttavia BertolliAlex BridglandAlexey CherepanovMiles CongreveA. Cowen-RiversAndrew CowieMichael FigurnovFabian B FuchsHannah GladmanRishub JainYousuf A. KhanCaroline M R LowKuba PerlinAnna PotapenkoPascal SavySukhdeep SinghA. SteculaAshok ThillaisundaramCatherine TongSergei YakneenEllen D. ZhongMichal ZielinskiAugustin ŽídekV. BapstPushmeet KohliMax JaderbergD. HassabisJ. Jumper
Nature Published 2024/05/08

Summary:

The new AlphaFold model demonstrates substantially improved accuracy over many previous specialized tools: far greater accuracy for protein–ligand interactions compared with state-of-the-art docking tools, much higher accuracy for protein–nucleic acid interactions compared with nucleic-acid-specific predictors and substantially higher antibody–antigen prediction accuracy.

The EMBL-EBI Job Dispatcher sequence analysis tools framework in 2024
F. Madeira;Nandana MadhusoodananJoon LeeAlberto EusebiAnia NiewielskaA. TiveyRodrigo LopezSarah Butcher
Nucleic Acids Research Published 2024/04/10

Summary:

Recent improvements to Job Dispatcher are overviews, including its brand new website and documentation, enhanced visualisations, improved job management, and a rising trend of user reliance on the service from low- and middle-income regions.

UniProt: the Universal Protein Knowledgebase in 2025
Alex Maria-Jesus Sandra Michele Aduragbemi Shadab Emily Bateman Martin Orchard Magrane Adesina Ahmad Bowle;Alex BatemanM. MartinSandra OrchardM. MagraneA. AdesinaShadab AhmadE. Bowler-BarnettHema Bye-A-JeeD. CarpentierPaulus DennyJun FanPenelope GarmiriLeonardo Jose da Costa GonzalesAbdulrahman HusseinAlexandr IgnatchenkoGiuseppe InsanaRizwan IshtiaqVishal JoshiDushyanth JyothiSwaathi KandasaamyA. LockAurélien LucianiJie LuoYvonne LussiJ. MarinPedro RaposoDan RiceRafael SantosElena SperettaJames L. StephensonPrabhat TotooNidhi TyagiNadya UrakovaPreethi VasudevKate WarnerSupun WijerathneConny Wing-Heng YuR. ZaruAlan J. BridgeL. AimoGhislaine Argoud-PuyA. AuchinclossK. AxelsenParit BansalDelphine BaratinTeresa M Batista NetoMarie-Claude BlatterJerven T. BollemanE. BoutetLionel BreuzaBlanca Cabrera GilCristina Casals-CasasKamal Chikh EchioukhE. CoudertB. CucheEdouard de CastroA. EstreicherM. FamigliettiM. FeuermannElisabeth GasteigerPascale GaudetS. GehantV. GerritsenA. GosNadine GruazC. HuloNevila Hyka-NouspikelF. JungoArnaud KerhornouP. MercierD. LieberherrP. MassonA. MorgatS. PaesanoI. PedruzziS. PilboutL. PourcelS. PouxM. PozzatoManuela PruessNicole RedaschiC. RivoireChristian J A SigristKarin SonessonS. SundaramAnastasia SveshnikovaCathy H. WuC. ArighiChuming ChenYongxing ChenHongzhan HuangK. LaihoMinna LehvaslaihoPeter B. McGarveyD. NataleKaren RossC. R. VinayakaYuqi WangJian Zhang
Nucleic Acids Research Published 2024/11/18
Extracellular vesicles as tools and targets in therapy for diseases
Mudasir A Kumar;S. K. BabaHana Q. SadidaSara Al MarzooqiJ. JerobinFaisal H. AltemaniNaseh A. AlgehainyMohammad A. AlanaziAbdul-Badi Abou-SamraRakesh KumarA. AL-SHABEEB AKILM. MachaRashid MirAjaz A. Bhat
Signal Transduction and Targeted Therapy Published 2024/02/05

Summary:

The roles of EVs across various conditions, including cancers, neurodegenerative disorders, diabetes, viral infections, autoimmune and renal diseases, are discussed, emphasizing the potential advancements in molecular diagnostics and drug delivery.

Solar Heating by Polyethylene Mulching for the Control of Diseases Caused by Soil-Borne Pathogens.
J. Katan;A. GreenbergerA. AlonA. GrinsteinH. AlonP. Greenberger
Phytopathology Published 2025/08/01
Cellular and molecular mechanisms of skin wound healing
Oscar A. Peña;Paul Martin
Nature Reviews Molecular Cell Biology Published 2024/03/25

Summary:

This Review discusses the complex mechanisms of wound healing — cell migration, matrix remodelling, inflammation and angiogenesis — and the contributions of different cell types, including immune cells, to this process, and highlights new methodologies that could inform future therapies to prevent scarring and repair chronic wounds.

The cell biology of ferroptosis
Scott J. Dixon;James A. Olzmann
Nature Reviews Molecular Cell Biology Published 2024/02/16

Summary:

This Review considers how the accumulation of membrane lipid peroxides leads to the execution of ferroptosis by altering ion transport across the plasma membrane and highlights transcriptional master regulators that integrate the functions of different pathways and organelles to modulate ferroptosis sensitivity globally.

The Role of Microbial Activity in Suppression of Damping-Off Caused by Pythium ultimum.
Weidong Chen;A. J. HoitinkA. SchmitthennerOlli H Tuovinen
Phytopathology Published 2025/08/01

Summary:

It was concluded that coexistence of large populations of mesophilic microorganisms, great microbial activity, low concentrations of available nutrients, and high degree of microbiostasis characterized container media suppressive to Pythium damping-off.

A DNA barcoding framework for taxonomic verification in the Darwin Tree of Life Project
A. Twyford;Jordan BeasleyIan BarnesHeather AllenFreja AzzopardiD. BellMark L. BlaxterGavin R. BroadL. Campos-DomínguezDarren ChooneaLiam M. CrowleyPiotr CuberMichael CunliffeAlexandra DombrowskiBrian DouglasL. ForrestEster GayaClementine GreevesClaire GriffinJoanna HarleyMichelle L HartPeter W. H. HollandPeter M. HollingsworthInez JanuszczakAmanda JonesPaul J. KerseyEstelle KiliasM. LawniczakOwen T. LewisSahr MianAlice MinottoRaju MisraPeter O. MulhairLyndall Pereira da ConceicoaBenjamin W. PriceSilvia SalatinoFelix ShawOlga SivellLaura SivessRebekka UhlKieran Woof
Wellcome Open Research Published 2024/06/24

Summary:

The development and implementation of DNA barcoding for the Darwin Tree of Life Project (DToL), which aims to sequence and assemble high quality reference genomes for all eukaryotic species in Britain and Ireland, is described.

Focal Adhesion Kinase Is Required for Intestinal Regeneration and Tumorigenesis Downstream of Wnt/c-Myc Signaling.
G. Ashton;J. MortonK. MyantT. PhesseR. RidgwayVictoria MarshJulie A. WilkinsD. AthineosV. MuncanRichard KempK. NeufeldH. CleversV. BruntonD. WintonXiaoyan WangR. SearsA. ClarkeM. FrameO. Sansom
Developmental cell Published 2025/05/01

Summary:

Focal Adhesion Kinase is required for Intestinal Regeneration and Tumorigenesis Downstream of Wnt/c-Myc Signaling downstream of Wnt/c-Myc Signaling.

One-quarter of freshwater fauna threatened with extinction
Catherine A. Sayer;Eresha FernandoRandall R JiménezNicholas B. W. MacfarlaneG. RapacciuoloM. BöhmThomas M. BrooksT. Contreras-MacBeathNeil A. CoxIan HarrisonMichael HoffmannRichard JenkinsKevin G. SmithJ. ViéJohn C. AbbottD. AllenGerald R. AllenVioleta BarriosJ. BoudotSavrina F. CarrizoPatrícia CharvetV. ClausnitzerL. CongiuKeith A. CrandallN. CumberlidgeAnnabelle CuttelodJames DaltonAdam G. DanielsS. De GraveGeert De KnijfK. DijkstraR. DowJörg FreyhofNieves GarcíaJoern GessnerA. GetahunClaudine GibsonM. GollockMichael I. GrantAlice E. R. GroomMichael P. HammerG. HammersonC. Hilton‐TaylorLaurel HodgkinsonRobert A. HollandR. JabadoDiego Juffe BignoliV. KalkmanB. KarimovJ. KippingM. KottelatP. LalèyèHelen K. LarsonM. LintermansFederico LozanoArne LudwigTimothy J. LyonsL. Máiz-ToméSanjay MolurH. NgC. NumaA. F. Palmer-NewtonCharlotte PikeH. PippardC. N. M. PolazCaroline M PollockR. RaghavanPeter S. RandTsilavina RavelomananaRoberto E. ReisCassandra L. RigbyJanet ScottP. SkeltonM. SloatJos SnoeksM. StiassnyHeok Hui TanYoshinori TaniguchiE. B. ThorstadM. TognelliArmi G. TorresY. TorresD. TweddleKatsutoshi WatanabeJames R. S. WestripEmma G. E. WrightE. ZhangW. Darwall
Nature Published 2025/01/08

Summary:

Although global priority regions identified for tetrapod conservation are broadly reflective of those for freshwater faunas, given differences in key threats and habitats, meeting the needs of tetrapods cannot be assumed sufficient to conserve freshwater species at local scales.

InterPro: the protein sequence classification resource in 2025
Matthias Blum;Antonina AndreevaLaise Cavalcanti FlorentinoS. ChuguranskyTiago GregoEmma E. M. HobbsBeatriz Lázaro PintoAilsa OrrT. Paysan-LafosseIrina PonamarevaGustavo A. SalazarNicola BordinP. BorkA. BridgeLucy J ColwellJulian GoughD. HaftIvica LetunicFelipe Llinares-LópezAron Marchler-BauerLaetitia Meng-PapaxanthosH. MiD. NataleChristine A OrengoA. P. PanduranganDamiano PiovesanC. RivoireChristian J. A. SigristN. ThankiF. Thibaud-NissenP. D. ThomasSilvio C. E. TosattoCathy H. WuA. Bateman
Nucleic Acids Research Published 2024/11/20

Summary:

The status of InterPro is reported on, detailing new developments in the database, associated web interface and software, including the increased integration of structures predicted by AlphaFold and the enhanced description of protein families using artificial intelligence.

The HADDOCK2.4 web server for integrative modeling of biomolecular complexes
Rodrigo V. Honorato;M. TrelletBrian Jiménez-GarcíaJörg SchaarschmidtMarco GiuliniVictor ReysPanagiotis I. KoukosJ. RodriguesE. KaracaG. V. van ZundertJorge Roel‐TourisCharlotte van NoortZuzana JandovaA. MelquiondA. Bonvin
Nature Protocols Published 2024/06/17

Summary:

This new version of the HADDOCK web server allows structural biologists and non-experts to explore intricate macromolecular assemblies encompassing various molecule types and supports various experimental data, including mutagenesis, NMR and cryo-EM data.

Trans-ancestry genome-wide study of depression identifies 697 associations implicating cell types and pharmacotherapies
Mark J. Adams;F. StreitXiangrui MengS. AwasthiB. AdeyKarmel W. ChoiV. K. ChundruJonathan R. I. ColemanBart FerwerdaJ. FooZ. GerringO. GiannakopoulouPriya GuptaAlisha S. M. HallA. HarderD. M. HowardChristopher HübelA. KwongD. LeveyBrittany L MitchellGuiyan NiVanessa K. OtaOliver PainGita A. PathakE. SchulteXueyi ShenJackson G. ThorpAlicia WalkerShuyang YaoJian ZengJohan ZvrskovecDag AarslandKy'Era V. ActkinsM. AdliE. AgerboM. AichholzerAllison E. AielloT. AirT. AlsEvelyn AnderssonTill F M AndlauerV. AroltH. AskJulia BäckmanS. BadolaC. BallardK. BanasikNicholas J. BassA. BeekmanS. BelangeroT. BigdeliE. BinderO. BjerkesetG. BjornsdottirS. BørteE. BrännA. BraunT. BrodersenTanja M. BrücklS. BrunakM. BruunMargit BurmeisterP. BuspavanichJ. Bybjerg-GrauholmEnda M. ByrneJianwen CaiA. CampbellMegan L. CampbellA. CamposE. CastelaoJ. CervillaB. ChaumetteChia-Yen ChenHsi- ChenZhengmin ChenS. CichonL. Colodro-CondeA. CorbettElizabeth C CorfieldB. Couvy-DuchesneN. CraddockU. DannlowskiG. DaviesE. D. GeusI. DearyFranziska DegenhardtAbbas DehghanJ. DePauloMichael DeuschleM. DidriksenK. M. DinhN. DirekS. DjurovicA. DochertyKatharina DomschkeJoseph DowsettO. K. DrangeErin C. DunnWilliam EatonG. EinarssonT. EleySamar S M ElsheikhJ. EngelmannM. BenrosC. ErikstrupV. Escott-PriceChiara FabbriYu FangS. FinerJ. FrankRobert C. FreeLinda GalloHe GaoMichael GillMaria GillesF. GoesScott D. GordonJakob GroveD. GudbjartssonBlanca GutiérrezTim HahnL. HallT. HansenM. HaraldssonCatharina HartmanA. HavdahlCaroline HaywardS. Heilmann-HeimbachS. HermsIan B. HickieHenrik HjalgrimJens Hjerling-LefflerP. HoffmannG. HomuthCarsten HornJ. HottengaD. HougaardIiris HovattaQ. HuangDonald HucksF. HuiderK. HuntNicholas S IalongoM. IsingE. IsometsäR. JansenYunxuan JiangIan JonesLisa A JonesL. JonssonM. KanaiR. KarlssonS. KasperKenneth S. KendlerRonald C KesslerS. KloiberJames A KnowlesN. KoenJ. KraftH. KranzlerKristi KrebsT. KallakZ. KutalikE. LahtelaMarilyn LakeM. LarsenE. LenzeMelissa LewinsGlyn LewisLiming LiB. LinKuang LinP. LindYu-Li LiuD. MacintyreD. MacKinnonB. MaherWolfgang MaierVictoria S. MarsheG. Martínez-LevyKoichi MatsudaH. MbarekP. McGuffinS. MedlandS. MeinertChristina MikkelsenS. MikkelsenY. MilaneschiI. MillwoodE. MolinaFrancis M. MondimoreP. MortensenBenoit H. MulsantJ. NaamankaJake M. NajmanMatthias NauckIgor NenadićKasper R. NielsenIlja M. NoltM. NordentoftM. NöthenM. NyegaardM. O’DonovanA. OddssonAdrielle M OliveiraC. OlsenH. OskarssonS. OstrowskiM. OwenR. PackerT. PalviainenP. M. PanCarlos N. PatoM. PatoNancy L PedersenO. B. PedersenW. PeyrotJ. PotashM. PreisigMichael H PreussJorge A. QuirozMiguel E. RenteríaCharles F. ReynoldsJohn P. RiceS. SakaueM. L. SantoroR. A. SchoeversAndrew J. SchorkThomas G SchulzeT. SendJianxin ShiE. SigurdssonKritika SinghGrant C. B. SinnamonL. SirignanoO. SmelandDaniel J. SmithT. SoferErik SørensenS. SrinivasanH. StefánssonK. StefánssonPeter StraubMei-Hsin SuA. TadićH. TeismannA. TeumerA. ThaparP. ThomsonL. ThørnerA. TopaloudiShih-Jen TsaiI. TzoulakiGeorge UhlA. UitterlindenH. UllumDaniel UmbrichtR. UrsanoS. AuweraA. M. HemertA. VeluchamyA. ViktorinH. VölzkeG. WaltersXiaotong WangAgaz H. WaniMyrna M WeissmanJ. WellmannD. WhitemanDerek WildmanG. WillemsenA. T. WilliamsB. WinsvoldS. WittY. XiongLea ZillichJ. ZwartTwenty-Three and Me Research TeamChina Kadoorie Biobank (CKB) Collab GroupEstonian Biobank Research TeamGenes Health Research TeamHunt All-In PsychiatryThe Biobank Japan ProjectV. M. V. ProgramOle A. AndreassenBernhard T. BauneKlaus BergerD. BoomsmaA. BørglumG. BreenNa CaiHilary CoonWilliam E. CopelandB. CreeseC. S. Cruz-FuentesD. CzamaraLea K. DavisE. DerksEnrico DomeniciP. ElliottA. ForstnerM. GawlikJ. GelernterH. J. GrabeSteven P. HamiltonKristian HveemCatherine JohnJ. KaprioT. KircherMarie-Odile KrebsPo-Hsiu KuoMikael LandénKelli LehtoD. LevinsonQingqin S LiK. LiebRuth J. F. LoosYi LuS. LucaeJ. LuykxHermine H. M. MaesP. MagnussonHilary C. MartinN. G. MartinA. McQuillinC. MiddeldorpL. MilaniOle MorsDaniel J. MüllerB. Müller-MyhsokYukinori OkadaA. OldehinkelS. PacigaColin N. A. PalmerP. PaschouB. PenninxR. PerlisRoseann E. PetersonG. PistisR. PolimantiD. PorteousD. PosthumaJill A RabinowitzTed Reichborn-KjennerudA. ReifFrances RiceR. RickenMarcella RietschelM. RiveraChristian RückGiovanni SalumCatherine SchaeferSrijan SenA. SerrettiA. SkalkidouJ. SmollerD. J. SteinF. SteinMurray B. SteinPatrick F. SullivanM. TesliT. ThorgeirssonHenning TiemeierN. TimpsonMonica UddinR. UherD. V. HeelKarin J H VerweijR. WaltersSylvia Wassertheil-SmollerJ. WendlandT. WergeA. ZwindermanKaroline KuchenbaeckerN. WrayS. RipkeC. LewisA. M. McIntosh
Cell Published 2025/01/01
ChromBPNet: bias factorized, base-resolution deep learning models of chromatin accessibility reveal cis-regulatory sequence syntax, transcription factor footprints and regulatory variants
Anusri Pampari;A. ShcherbinaEvgeny Z. KvonMichael KosickiSurag NairSoumya KunduArwa S. KathiriaViviana I. RiscaKristiina KuningasKaur AlasooWilliam J. GreenleafLen A. PennacchioAnshul B Kundaje
bioRxiv Published 2025/01/08

Summary:

ChromBPNet is introduced, a deep learning DNA sequence model of base-resolution accessibility profiles that detects, learns and deconvolves assay-specific enzyme biases from regulatory sequence determinants of accessibility, enabling robust discovery of compact TF motif lexicons, cooperative motif syntax and precision footprints across assays and sequencing depths.

Genomics yields biological and phenotypic insights into bipolar disorder
K. S. O’Connell;M. KorominaTracey van der VeenT. BoltzF. DavidJ. M. K. YangKeng-Han LinXin WangJonathan R. I. ColemanBrittany L MitchellC. McGroutherA. RanganP. LindE. KochA. HarderN. ParkerJ. BendlK. AdorjanE. AgerboD. AlbaniS. AlemanyN. Alliey-RodriguezT. AlsTill F M AndlauerA. AntoniouH. AskNicholas J. BassMichael BauerE. BeinsT. BigdeliC. B. PedersenM. BoksS. BørteRosa BoschM. BrumB. M. BrumptonN. Brunkhorst-KanaanM. BuddeJ. Bybjerg-GrauholmW. ByerleyJ. Cabana-DomínguezMurray J. CairnsB. CarpinielloM. CasasP. CervantesC. ChatzinakosHsi- ChenT. ClarenceToni‐Kim ClarkeI. ClausBrandon J. CoombesE. CorfieldC. CruceanuA. Cuellar-BarbozaP. CzerskiK. DafnasA. DaleN. DalknerFranziska DegenhardtJ. DePauloS. DjurovicO. K. DrangeV. Escott-PriceA. FanousF. FellendorfI. FerrierL. FortyJ. FrankO. FreiNelson B. FreimerJ. FullardJ. GarnhamI. GizerS. GordonK. Gordon-SmithTiffany A. GreenwoodJakob GroveJ. Guzmán-ParraTae Hyon HaTim HahnM. HaraldssonM. HautzingerA. HavdahlU. HeilbronnerDennis HellgrenS. HermsIan B. HickieP. HoffmannP. HolmansMing-Chyi HuangM. IkedaS. JamainJessica S. JohnsonL. JonssonJ. KalmanY. KamataniJames L KennedyEuitae KimJaeyoung KimS. Kittel-SchneiderJames A KnowlesManolis KogevinasT. KranzKristi KrebsSteven A. KushnerC. LavebrattJ. LawrenceM. LeberHeon-Jeong LeeCalwing LiaoS. LucaeM. LundbergD. MacintyreWolfgang MaierA. MaihoferDolores MalaspinaM. ManchiaE. MaratouLina MartinssonM. MattheisenN. McGregorMelvin G. McInnisJames D. MckayH. MedeirosAndreas Meyer-LindenbergV. MillischerDerek W. MorrisP. MoutsatsouThomas W. MühleisenC. O’DonovanC. OlsenGeorgia PanagiotaropoulouS. PapiolA. PardiñasHye Youn ParkA. PerryAndrea PfennigC. PisanuJ. PotashDigby QuestedMark H. RapaportE. J. RegeerJohn P. RiceM. RiveraEva C. SchulteF. SennerA. ShadrinP. ShillingE. SigurdssonL. SindermannL. SirignanoD. SiskindC. SlaneyLaura G. SloofmanO. SmelandDaniel J SmithJ. SobellM. Soler ArtigasD. J. SteinF. SteinMei-Hsin SuHeejong SungB. ŚwiątkowskaC. TeraoMarkos TesfayeM. TesliT. ThorgeirssonJackson G. ThorpClaudio TomaL. TondoP. TooneyShih-Jen TsaiE. TsermpiniM. VawterH. VedderAnnabel VreekerJames T. R. WaltersB. WinsvoldS. WittHong-Hee WonRobert YeAllan H. YoungP. ZandiLea ZillichByung LeeJi-Woong KimYoung Kee LeeJoon Ho KangM. CheonDong Jun KimMihaela AslanPhilip D HarveyGrant D HuangR. AdolfssonM. AldaLars AlfredssonL. BacklundB. T. BauneF. BellivierS. BengesserW. BerrettiniJ. BiernackaM. BoehnkeA. BørglumG. BreenV. CarrS. CattsS. CichonA. CorvinN. CraddockU. DannlowskiD. DikeosB. ÉtainP. FerentinosM. FryeJ. FullertonM. GawlikE. GershonF. GoesM. GreenM. Grigoroiu-SerbanescuJoanna HauserF. HenskensJ. Hjerling-LefflerD. HougaardKristian HveemNakao IwataIan JonesLisa A JonesRené S KahnJ. KelsoeT. KircherG. KirovPo-Hsiu KuoM. LandénM. LeboyerQingqin S LiJ. LissowskaC. LochnerC. LoughlandJ. LuykxNicholas G. MartinC. MathewsF. MayoralSusan L McElroyAndrew M. McIntoshF. McMahonS. MedlandI. MelleL. MilaniP. MitchellGunnar MorkenOle MorsP. MortensenB. Müller-MyhsokRichard M. MyersW. MyungB. NealeC. NievergeltM. NordentoftM. NöthenJ. NurnbergerM. O’DonovanK. OedegaardTomas OlssonM. OwenS. PacigaC. PantelisCarlos N. PatoM. PatoG. PatrinosJoanna M PawlakJ. Ramos-QuirogaA. ReifE. ReininghausM. RibasésMarcella RietschelS. RipkeGuy A RouleauP. RoussosTakeo SaitoU. SchallM. SchallingP. R. SchofieldT. G. SchulzeLaura J. ScottRodney J. ScottA. SerrettiJ. SmollerA. SquassinaE. StahlH. StefánssonKári StefánssonE. StordalF. StreitP. SullivanG. TureckiA. VaalerEduard VietaJ. B. VincentIrwin D. WaldmanC. WeickertT. WeickertT. WergeDavid C. WhitemanJ. ZwartH. EdenbergA. McQuillinA. ForstnerN. MullinsA. Di FlorioR. OphoffO. Andreassen
Nature Published 2025/01/22

Summary:

Several analyses implicate specific cell types in the pathophysiology of bipolar disorder, including GABAergic interneurons and medium spiny neurons, and provide additional insights into the genetic architecture and biological underpinnings of bipolar disorder.

A neoantigen vaccine generates antitumour immunity in renal cell carcinoma
David A. Braun;Giorgia MoranzoniVipheaviny CheaB. McGregorEryn BlassChloe R. TuAllison P. VanasseCleo FormanJ. FormanAlexander B. AfeyanN. SchindlerYiwen LiuShuqiang LiJackson SouthardSteven L ChangM. HirschN. LeBoeufOriol OliveAmbica MehndirattaHaley GreensladeKeerthi ShettySusan KlaegerSiranush SarkizovaC. B. PedersenM. MossanenIsabel CarulliAnna TarrenJoseph E. Duke-CohanAlexis A. HowardJ. IorgulescuBohoon ShimJeremy M SimonS. SignorettiJon C. AsterLiudmila ElaginaSteve CarrI. LeshchinerG. GetzS. GabrielN. HacohenLars R OlsenGiacomo OliveiraD. NeubergK. LivakS. ShuklaE. FritschCatherine J WuDerin B. KeskinP. OttT. Choueiri
Nature Published 2025/02/05

Summary:

Results demonstrate that neoantigen-targeting PCVs in high-risk RCC are highly immunogenic, capable of targeting key driver mutations and can induce antitumour immunity, and highlights the promise of PCVs as effective adjuvant therapy in RCC.

Complete sequencing of ape genomes
DongAhn Yoo;A. RhiePrajna HebbarF. AntonacciGlennis A. LogsdonSteven J. SolarD. AntipovBrandon D. PickettYana SafonovaFrancesco MontinaroYanting LuoJoanna MalukiewiczJessica M. StorerJiadong LinAbigail N SequeiraRiley J. ManganG. HickeyGraciela Monfort AnezParithi BalachandranAnton BankevichChristine R. BeckArjun BiddandaM. BorchersG. BouffardEmry BrannanShelise Y. BrooksLucia CarboneLaura CarrelAgnes P. ChanJuyun CrawfordM. DiekhansEric EngelbrechtCédric FeschotteG. FormentiGage H. GarciaLuciana de GennaroDavid M. GilbertRichard E. GreenA. GuarracinoIshaan GuptaDiana HaddadJunmin HanRobert S. HarrisGabrielle HartleyWilliam T. HarveyMichael HillerKendra HoekzemaM. HouckHyeonsoo JeongKaivan KamaliM. KellisBryce KilleChul LeeYoungho LeeWilliam D LeesAlexandra P. LewisQiuhui LiMark LoftusYong-Hwee E LohHailey LoucksJian MaYafei MaoJuan F. I. MartinezPatrick MastersonR. McCoyBarbara McGrathSean McKinneyBritta S. MeyerK. MigaS. MohantyKatherine M. MunsonKarol PálMatt PennellPavel A. PevznerDavid PorubskyT. PotapovaF. R. RingelingJoana L. RochaOliver A. RyderSamuel SaccoSwati SahaTakayo SasakiMichael C. SchatzNicholas J SchorkCole ShanksLinnéa SmedsDongmin R. SonCynthia SteinerAlex SweetenMichael G. TassiaF. Thibaud-NissenEdmundo Torres-GonzálezMihir TrivediWenjie WeiJulie WertzMuyu YangPanpan ZhangShilong ZhangYang ZhangZhenmiao ZhangSarah A. ZhaoYixin ZhuErich D. JarvisJ. GertonIker Rivas-GonzálezBenedict PatenZachary A. SzpiechC. HuberTobias L. LenzMiriam K. KonkelSoojin V YiS. CanzarCorey T. WatsonPeter H. SudmantErin K. MolloyErik GarrisonCraig B. LoweMario VenturaRachel J. O’NeillS. KorenKateryna D. MakovaA. PhillippyE. Eichler
Nature Published 2025/04/09

Summary:

Complete sequences of chromosomes telomere-to-telomere from chimpanzee, bonobo, gorilla, Bornean orangutan, Sumatran orangutan and siamang provide a comprehensive and valuable resource for future evolutionary comparisons.

Bile acid synthesis impedes tumor-specific T cell responses during liver cancer.
S. K. Varanasi;Dan ChenYingluo LiuMelissa A. JohnsonCayla MillerSouradipta GangulyKathryn LandeMichael A LaPortaF. HoffmannThomas H. MannM. TenecheEduardo CasillasK. MangalharaVarsha MathewMing SunIsaac J. JensenYagmur FarsakogluTimothy ChenBianca ParisiS. DeotaAaron P. HavasJin LeeH. K. ChungA. SchietingerS. PandaApril E. WilliamsDonna L. FarberD. DharP. AdamsGen-Sheng FengGerald S. ShadelMark S. SundrudS. Kaech
Science Published 2025/01/10

Summary:

It is demonstrated that modifying BA synthesis or dietary intake of ursodeoxycholic acid could improve tumor immunotherapy in liver cancer model systems.

The wound microbiota: microbial mechanisms of impaired wound healing and infection
A. Uberoi;A. McCready-VangiElizabeth A. Grice
Nature Reviews Microbiology Published 2024/04/04

Summary:

The current understanding of how microorganisms present in wounds impact the process of skin repair and lead to infection through their actions on the host and the other microbial wound inhabitants is explored.

Genetic drivers of heterogeneity in type 2 diabetes pathophysiology
Ken Suzuki;K. HatzikotoulasL. SouthamHenry J. TaylorXianyong YinKimberly M. LorenzRavi MandlaA. Huerta-ChagoyaGiorgio E. M. MelloniS. KanoniN. W. RaynerO. BocherA. ArrudaK. SoneharaS. NambaSimon LeeMichael H. PreussLauren E. PettyPhilip H. SchroederBrett R. VanderwerffM. KalsF. BraggKuang LinXiuqing GuoWeihua ZhangJie YaoYoung Jin KimM. GraffF. TakeuchiJ. NanoAmel LamriM. NakatochiSanghoon MoonRobert A. ScottJ. CookJung-Jin LeeIan PanD. TaliunE. ParraJin-Fang ChaiL. BielakY. TabaraY. HaiG. ThorleifssonN. GrarupT. SoferM. WuttkeC. SarnowskiC. GiegerDarryl NousomeS. TrompetS. KwakJ. LongMeng SunL. TongWei-Min ChenSuraj S NongmaithemR. NoordamV. J. LimC. H. TamYoonjung Yoonie JooChien-Hsiun ChenL. RaffieldB. PrinsA. NicolasL. YanekGuanjie ChenJ. BrodyE. KabagambePing AnAnny H. XiangHyeok Sun ChoiB. CadeJingyi TanK. A. BroadawayA. WilliamsonZoha KamaliJ. CuiManonanthini ThangamLinda S. AdairA. AdeyemoC. Aguilar-SalinasT. AhluwaliaS. AnandAlain G. BertoniJ. Bork-JensenIvan BrandslundThomas A. BuchananC. BurantA. ButterworthM. CanouilJuliana C N ChanLi ChangM. CheeJi ChenShyh-Huei ChenYuan-Tsong ChenZhengmin ChenLee-Ming ChuangMary CushmanJ. DaneshSwapan K. DasH. D. de SilvaG. DedoussisLatchezar DimitrovA. DoumateyS. DuQing DuanK.-U. EckardtL. EmeryDaniel S. EvansMichele K. EvansK. FischerJames S FloydIan FordOscar H. FrancoT. FraylingB. FreedmanP. GenterH. GersteinV. GiedraitisC. González‐VillalpandoM. González-VillalpandoP. Gordon-LarsenMyron GrossLindsay A GuareS. HackingerL. HakasteSohee HanA. HattersleyC. HerderM. HorikoshiA. HowardWilla A. HsuehMengna HuangWei HuangY. HungM. Y. HwangC. HwuS. IchiharaM. IkramM. IngelssonMd. Tariqul IslamM. IsonoHye-Mi JangF. JasmineGuozhi JiangJ. JonasT. JørgensenFrederick K. KamanuFouad R. KandeelA. KasturiratneTomohiro KatsuyaV. KaurT. KawaguchiJacob M. KeatonAbel N. KhoC. KhorM. KibriyaDuk-Hwan KimF. KronenbergJ. KuusistoKristi LällLeslie A. LangeK. LeeMyung-Shik LeeN. LeeAaron LeongLiming LiYun LiRuifang Li-GaoSymen LigthartCecilia M. LindgrenA. LinnebergChing-Ti LiuJianjun LiuA. LockeT. LouieJ. LuanA. LukXi LuoJun LvJ. LynchV. LyssenkoShiro MaedaVasiliki MamakouS. R. MansuriKoichi MatsudaT. MeitingerOlle MelanderA. MetspaluHuan MoA. D. MorrisFilipe A MouraJerry L. NadlerMichael A. NallsUma NayakI. NtallaY. OkadaL. OrozcoSanjay R. PatelSnehal PatilP. PeiMark A PereiraA. PetersF. PirieHannah G. PolikowskyBianca C. PornealaGauri PrasadL. Rasmussen-TorvikAlexander P. ReinerM. RodenRebecca R. RohdeK. RollC. SabanayagamKevin SandowAlagu SankareswaranNaveed SattarS. SchönherrM. ShahriarBotong ShenJinxiu ShiDong Mun ShinN. ShojimaJennifer A. SmithW. SoA. StančákováV. SteinthorsdottirA. StilpK. StrauchK. TaylorBarbara ThorandU. ThorsteinsdóttirB. TomlinsonTam C. TranF. TsaiJaakko TuomilehtoTeresa Tusié-LunaM. UdlerA. Valladares-SalgadoRob M. van DamJ. V. van KlinkenRohit VarmaNiels Wacher-RodarteEleanor WheelerA. R. WickremasingheKo Willems van DijkD. WitteC. YajnikKenichi YamamotoKenichi YamamotoKyungheon YoonCanqing YuJian-Min YuanSalim YusufM. ZawistowskiLiang ZhangWei ZhengL. RaffelM. IgaseEli IppS. RedlineYoon Shin ChoL. LindM. ProvinceM. FornageC. HanisE. IngelssonA. ZondermanB. PsatyYa-Xing WangC. RotimiDiane M. BeckerFumihiko MatsudaYongmei LiuM. YokotaS. KardiaP. PeyserJ. PankowJ. EngertA. BonnefondP. FroguelJames G WilsonW. H. SheuJer-Yuarn WuM. HayesR. MaTien Y. WongD. Mook-KanamoriT. TuomiG. ChandakF. CollinsD. BharadwajGuillaume ParéM. SaleH. AhsanA. MotalaX. ShuK. ParkJ. JukemaMiguel CruzYii-DerIda ChenS. RichR. Mckean-CowdinH. GrallertChing-Yu ChengM. GhanbariE. TaiJose C DupuisNorihiro KatoM. LaaksoA. KöttgenWoon-Puay KohD. BowdenColin N. A. PalmerJ. KoonerC. KooperbergSimin LiuK. NorthD. SaleheenT. HansenO. PedersenN. WarehamJuyoung LeeBong-Jo KimI. MillwoodR. WaltersK. StefánssonE. AhlqvistM. GoodarziK. MohlkeC. LangenbergC. HaimanRuth J. F. LoosJ. C. FlorezDaniel J. RaderMarylyn D. RitchieSebastian ZöllnerR. MägiN. MarstonC. RuffD. V. van HeelS. FinerJoshua C. DennyT. YamauchiTakashi KadowakiJ. C. ChambersM. NgXueling SimJ. BelowP. TsaoKyong-Mi ChangM. McCarthyJames B. MeigsA. MahajanCassandra N. SpracklenJosep M. MercaderM. BoehnkeJ. RotterM. VujkovićB. VoightA. P. MorrisE. Zeggini
Nature Published 2024/02/19

Summary:

A meta-analysis of genome-wide association studies of type 2 diabetes (T2D) identifies more than 600 T2D-associated loci; integrating physiological trait and single-cell chromatin accessibility data at these loci sheds light on heterogeneity within the T2D phenotype.

The Role of Quercetin, a Flavonoid in the Management of Pathogenesis Through Regulation of Oxidative Stress, Inflammation, and Biological Activities
H. Alharbi;Mohammad AlshebremiA. BabikerA. Rahmani
Biomolecules Published 2025/01/01

Summary:

It is important to conduct more clinical trials to gain a deeper understanding of the disease-preventive potential, mechanisms of action, safety, and optimal therapeutic dosages of quercetin, and the sources of quercetin, nanoformulations, and its applications in health management.

A distinct Fusobacterium nucleatum clade dominates the colorectal cancer niche
Martha A. Zepeda-Rivera;Samuel S. MinotHeather BouzekHanrui WuA. Blanco-MíguezPaolo ManghiDakota S JonesKaitlyn D. LacourseYing WuElsa F. McMahonSoon‐Nang ParkY. K. LimAndrew G. KempchinskyAmy D. WillisSean L CottonSusan C YostEwa T SicinskaJ. KookF. DewhirstN. SegataS. BullmanChristopher D. Johnston
Nature Published 2024/03/20

Summary:

The results identify the Fna clade bifurcation, show that specifically Fna C2 drives the reported Fn enrichment in human CRC and reveal the genetic underpinnings of pathoadaptation of Fna C2 to the CRC niche.

Genomic data in the All of Us Research Program
Alexander G. Ginger A. Kelsey R. Lee Shimon Robert J. Anjene Bick Metcalf Mayo Lichtenstein Rura Carroll Musick;Alexander G. Ginger A. Kelsey R. Lee Shimon Robert J. Anjene Bick Metcalf Mayo Lichtenstein Rura Carroll MusickAlexander G. BickG. MetcalfKelsey MayoLee T LichtensteinS. RuraRobert J. CarrollA. MusickJ. LinderI. JordanS. NagarShivam SharmaRob MellerMelissa Eric Mine S. Kimberly F. Evan E. Stacey Richard A. Basford Boerwinkle Cicek Doheny Eichler Gabriel GiMelissa A. BasfordE. BoerwinkleMine S. CicekK. DohenyE. EichlerS. GabrielR. A. GibbsDavid GlazerPaul A. HarrisGail P. JarvikA. PhilippakisHeidi L. RehmDan M. RodenS. ThibodeauS. TopperAshley L. Samantha J. Victoria A. Jeffrey G. Mine S. Blegen Wirkus Wagner Meyer CicekAshley L. BlegenSamantha J. WirkusVictoria A. WagnerJeffrey G. MeyerDonna M. Eric Michelle Z. Sean M. L. Elvin Hua Marcia K. Muzny Venner Mawhinney Griffith Hsu Ling Adams WalD. MuznyE. VennerMichelle MawhinneySean GriffithElvin HsuHua LingMarcia K. AdamsK. WalkerJianhong HuH. DoddapaneniC. KovarM. MuruganShannon P. DuganZiad M. KhanNiall J. Christina Eric Michael Namrata Emma Katie Sheli Lennon Austin-Tse Banks Gatzen Gupta Henricks LarsN. LennonC. Austin-TseE. BanksMichael GatzenNamrata GuptaEmma R. HenricksKatie LarssonSheli McDonoughS. HarrisonC. KachulisMatthew S. LeboC. NebenMarcie A. SteevesA. Y. ZhouJoshua D. Christian D. Colleen P. Karynne E. Marsha M. Se Smith Frazar Davis Patterson Wheeler McGee LockwooJosh SmithC. D. FrazarColleen P. DavisKarynne E. PattersonMarsha M. WheelerSean McgeeC. M. LockwoodB. ShirtsColin C. PritchardMitzi L. MurrayValeria VastaDru F. LeistritzMatthew A. RichardsonJillian G. BuchanA. RadhakrishnanNiklas KrummBrenna EhmenSophie M. Morgan T. Kristian Andrea Rebecca Aurora Kylee Schwartz Aster Cibulskis Haessly Asch Cremer DegatSophie SchwartzM. AsterK. CibulskisAndrea HaesslyRebecca AschAurora CremerKylee DegatanoAkum ShergillL. GauthierSamuel K. LeeAaron HatcherGeorge B. GrantGenevieve R. BrandtMiguel CovarrubiasE. BanksAshley AbleAshley E. GreenRobert J. CarrollJennifer ZhangH. CondonYuanyuan WangMoira K. DillonC. AlbachWail BaalawiSeung Hoan Xin Elisabeth A. Choi Wang RosenthalSeung Hoan ChoiXin WangE. RosenthalAndrea H. Sokny Siddhartha Bradley Anastasia L. Chris Geo Ramirez Lim Nambiar Ozenberger Wise Lunt Ginsburg Andrea RamirezSokny LimSiddhartha NambiarB. OzenbergerAnastasia WiseC. LuntGeoffrey S. GinsburgJ. Denny
Nature Published 2024/02/19

Summary:

The release of clinical-grade whole-genome sequence data for 245,388 diverse participants by the All of Us Research Program is described and it is anticipated that this diverse dataset will advance the promise of genomic medicine for all.

Embracing cancer complexity: Hallmarks of systemic disease
C. Swanton;Elsa BernardChris AbboshFabrice AndréJohan AuwerxAllan BalmainDafna Bar-SagiRené BernardsSusan BullmanJames DeGregoriCatherine ElliottA. ErezGerard EvanM. FebbraioAndrés HidalgoM. Jamal-HanjaniJohanna A. JoyceMr. KaiserKatja A LamiaJ. LocasaleS. LoiI. MalanchiM. MeradKathryn MusgraveKetan J. PatelSergio A. QuezadaJ. WargoA. WeeraratnaEileen WhiteF. WinklerJohn N. WoodK. VousdenDouglas Hanahan
Cell Published 2024/03/01

Summary:

Complexes of cancer as a systemic disease are discussed, including tumor initiation and promotion, tumor micro- and immune macro-environments, aging, metabolism and obesity, cancer cachexia, circadian rhythms, nervous system interactions, tumor-related thrombosis, and the microbiome.

Oxidative stress and inflammation in the pathogenesis of neurological disorders: Mechanisms and implications
Umesh Chandra Dash;Nitish Kumar BholSandeep Kumar SwainRashmi Rekha SamalPrabhat Kumar NayakVishakha RainaSandeep Kumar PandaRout George KerryA. DuttaroyA. B. Jena
Acta Pharmaceutica Sinica. B Published 2024/10/01

Summary:

By understanding the intricate interplay between oxidative stress and neurological disorders, scientists hope to pave the way for innovative therapeutic and preventive approaches, ultimately improving individuals' living standards.

The global H5N1 influenza panzootic in mammals
T. Peacock;Louise H. MonclaGytis DudasDavid VanInsbergheKsenia SukhovaJ. Lloyd-SmithMichael WorobeyA. LowenMartha I. Nelson
Nature Published 2024/09/24

Summary:

The molecular and ecological factors driving the sudden expansion in H5N1 host range are explored, the likelihood of different zoonotic pathways leading to an H5N1 pandemic is assessed and Dairy cattle, farmed mink or South American sea lions may have the potential to serve as new mammalian gateways for transmission of avian influenza viruses to humans.

One-shot design of functional protein binders with BindCraft
Martin Pacesa;Lennart NickelChristian SchellhaasJoseph SchmidtEkaterina PyatovaLucas KisslingPatrick BarendseJagrity ChoudhurySrajan KapoorA. Alcaraz-SernaYehlin ChoKourosh H. GhamaryLaura VinuéB. YachninAndrew M. WollacottStephen BuckleyA. WestphalS. LindhoudS. GeorgeonCasper A. GoverdeG. HatzopoulosP. GönczyYannick D. MullerGerald SchwankD. C. SwartsA. VecchioBernard L. SchneiderSergey OvchinnikovBruno E. Correia
Nature Published 2025/08/27

Summary:

BindCraft, an open-source and automated pipeline for de novo protein binder design with experimental success rates of 10–100%, leverages AlphaFold2 weights to generate binders with nanomolar affinity without the need for high-throughput screening.

Ensembl 2025
Sarah Dyer;Olanrewaju Austine-OrimoloyeA. G. AzovMatthieu BarbaIf H. A. BarnesV. Barrera-EnríquezArne BeckerRuth BennettMartin BeracocheaAndrew E. BerryJyothish BhaiSimarpreet Kaur BhurjiSanjay BodduPaulo R Branco LinsLucy BrooksShashank Budhanuru RamarajuLahcen CampbellManuel Carbajo MartinezMehrnaz CharkhchiLucas A CortesC. DavidsonSukanya DenniK. DodiyaS. DonaldsonBilal El HoudaiguiTamara El NaboulsiOluwadamilare FalolaReham FatimaThiago GenezJ. G. MartinezTatiana A. GurbichMatthew HardyZoe HollisT. HuntM. KayVinay KaykalaDiana LemosDisha LodhaNourhen MathlouthiGabriela A. MerinoRyan MerrittLouisse Paola MirabuenoAleena MushtaqSyed Nakib HossainJose Perez-SilvaMalcolm PerryIvana PilizotaDaniel PoppletonIrina ProsovetskaiaShriya RajA. I. A. SalamShradha SarafNuno Saraiva-AgostinhoSwati SinhaBotond SiposVasily SitnikEmily SteedM. SunerLikhitha SurapaneniKyösti SutinenF. F. TricomiIan TsangDavid Urbina-GómezA. VeidenbergThomas A WalshNatalie L. WillhoftJames E. AllenJorge Alvarez-JarretaMarc ChakiachviliJitender CheemaJorge Batista da RochaNishadi H. De SilvaStefano GiorgettiLeanne HaggertyGarth R. IlsleyJon KeatleyJ. LovelandB. MooreJonathan M. MudgeG. NaamatiJohn G. TateS. TrevanionAndrea WinterbottomBeth FlintA. FrankishSarah E. HuntRobert D. FinnM. FreebergPeter W. HarrisonFergal J. MartinAndrew D. Yates
Nucleic Acids Research Published 2024/12/04

Summary:

The new Ensembl site, currently in beta, has continued to develop, currently holding >2700 eukaryotic genome assemblies and will replace the current Rapid Release site, and represents a key step towards provision of a single integrated Ensembl site.

Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program
Anurag Verma;Jennifer E. HuffmanAlex RodriguezMitchell ConeryMolei LiuY. HoYoungdae KimDavid HeiseLindsay A GuareV. PanickanH. GarconFranciel LinaresLauren CostaIan GoethertRyan TiptonJ. HonerlawLaura DaviesS. WhitbourneJeremy CohenD. PosnerRahul SangarMichael MurrayXuan WangDaniel R. DochtermannP. DevineniYunling ShiT. NandiT. AssimesCharles A. BrunetteRobert J. CarrollRoyce CliffordS. DuvallJ. GelernterA. HungSudha K. IyengarJacob JosephR. KemberH. KranzlerColleen M. KripkeD. LeveyS. LuohVictoria C. MerrittC. OverstreetJ. DeakStruan F. A. GrantR. PolimantiPanagiotis RoussosG. ShaktYan V. SunN. TsaoS. VenkateshG. VoloudakisAmy JusticeE. BegoliRachel RamoniGeorgia D. TourassiS. PyarajanPhil TsaoChristopher J. O’DonnellS. MuralidharJ. MoserJuan P. CasasAlexander G. BickWei ZhouTianxi CaiB. VoightKelly ChoJ. GazianoR. MadduriS. DamrauerKatherine P. Liao
Science Published 2024/07/19
Exploring and retrieving sequence and metadata for species across the tree of life with NCBI Datasets
Nuala A O'Leary;Eric CoxJ. B. HolmesW. R. AndersonRobert FalkVichet HemMirian T N TsuchiyaGregory D SchulerXuan ZhangJohn P TorciviaAnne KetterLaurie BreenJonathan CothranH. BajwaJovany TinnePeter A. MericW. HlavinaValerie A Schneider
Scientific Data Published 2024/07/05

Summary:

The current scope of data accessible through NCBI Datasets is outlined and various options for exploring and downloading the data are explained, facilitating improved data retrieval, sharing, and usability in research.

Phylogenomics and the rise of the angiosperms
A. Zuntini;Tom CarruthersOlivier MaurinP. BaileyKevin LeempoelG. BrewerNiroshini EpitawalageElaine FrançosoBerta Gallego-ParamoCatherine McGinnieR. NegrãoShyamali RoyLalita SimpsonEduardo Toledo RomeroV. BarberLaura R. BotiguéJ. J. ClarksonRobyn S. CowanS. DodsworthMatthew G. JohnsonJan T KimL. PokornyN. WickettG. AntarLucinda DeBoltKarime GutierrezKasper P. HendriksAlina HoewenerAi-Qun HuE. JoyceI. KikuchiI. LarridonDrew A. LarsonElton John de LírioJing‐Xia LiuP. MalakasiNatalia A. S. PrzelomskaToral ShahJ. ViruelTheodore R. AllnuttG. AmekaRose L. AndrewM. AppelhansM. AristaMaría Jesús ArizaJuan ArroyoWatchara ArthanJ. BachelierC. D. BaileyHelen F BarnesM. BarrettR. BarrettR. J. BayerM. BaylyE. BiffinNicky BiggsJ. BirchD. BogarínRenata BorosovaAlexander M. C. BowlesPeter C. BoyceGemma BramleyMarie BriggsLinda BroadhurstGillian K BrownJ. BruhlAnne BruneauS. BuerkiEdie BurnsM. ByrneS. CableAinsley CalladineM. CallmanderÁ. CanoD. CantrillWarren M. Cardinal-McTeagueM. CarlsenAbigail J A CarruthersAlejandra de Castro MateoMark W. ChaseL. ChatrouM. CheekShilin ChenMaarten J. M. ChristenhuszP. ChristinMark A. ClementsSkye C CoffeyJ. ConranXavier CornejoT. CouvreurIan D CowieLaszlo CsibaI. DarbyshireG. DavidseNina M J DaviesA. DavisKor-jent van DijkS. R. DownieM. DurettoM. DuvallSara L EdwardsUrs EggliR. ErkensMarcial EscuderoM. de la EstrellaFederico FabrianiMichael F. FayP. D. L. FerreiraSarah Z. FicinskiRachael M. FowlerS. FrisbyLin FuT. FulcherM. Galbany‐CasalsE. GardnerD. GermanAugusto GiarettaM. GibernauLynn J. GillespieCynthia C GonzálezD. GoyderSean W. GrahamA. GrallLaura GreenBee F. GunnDiego G. GutiérrezJan HackelThomas HaevermansA. HaighJ. C. HallT. HallMelissa J. HarrisonS. HattO. HidalgoT. HodkinsonG. HolmesH. C. HopkinsChristopher J. JacksonShelley A. JamesR. JobsonG. KadereitImalka M. KahandawalaKent KainulainenMasahiro KatoElizabeth A. KelloggGraham J KingBeata KlejevskajaB. KlitgaardR. KlopperSandra KnappMarcus A. KochJames H. Leebens-MackF. LensChristine J LeonÉtienne Léveillé‐BourretG. LewisDe‐Zhu LiLan LiS. Liede‐SchumannTatyana LivshultzD. LorenceMeng LuPatricia Lu-IrvingJaquelini LuberEve J. LucasManuel LujánMabel LumTerry D. MacfarlaneCarlos MagdalenaV. F. MansanoLizo E. MastersS. MayoKristina McCollAngela J McDonnellAndrew E. McDougallT. McLayHannah McPhersonR. I. MenesesV. MerckxF. MichelangeliJ. MitchellAlexandre K. MonroMichael J. MooreTaryn L. MuellerK. MummenhoffJ. MunzingerPriscilla MurielDaniel J. MurphyKatharina NargarLars NauheimerF. J. NgeR. NyffelerAndrés OrejuelaEdgardo M. OrtizL. PalazzesiA. PeixotoS. PellJ. PellicerD. PenneysÓ. Pérez-EscobarC. PerssonMarc PignalY. PillonJ. PiraniG. PlunkettR. F. PowellG. PranceCarmen PuglisiMing QinR. RabelerPaul ReesMatthew A. M. RennerE. RoalsonM. RoddaZ. S. RogersS. RokniR. RutishauserM. D. DE SALASHanno SchaeferRowan J. SchleyA. Schmidt‐LebuhnA. ShapcottI. AL-SHEHBAZK. ShepherdMark P. SimmonsAndré O. SimõesA. R. SimõesMichelle SirosE. SmidtJames F. SmithNeil W. SnowD. SoltisP. SoltisR. SorengC. SothersJ. StarrPeter F. StevensS. StraubL. StruweJennifer M TaylorI. TelfordAndrew H. ThornhillIfeanna M. ToothA. Trias‐BlasiF. UdovicicT. UtteridgeJ. C. del ValleG. VerboomHelen P VonowM. VorontsovaJ. D. de VosNoor Al-WattarM. WaycottC. A. WelkerAdam J WhiteJ. WieringaLuis T. WilliamsonTrevor C. WilsonS. WongLisa A WoodsRoseina WoodsS. WorboysMartin D. XanthosYa YangYu‐Xiao ZhangMeng‐Yuan ZhouS. ZmarztyF. ZuloagaA. AntonelliS. BellotD. CraynO. GracePaul J. KerseyI. LeitchH. SauquetStephen A. SmithW. EiserhardtF. ForestWilliam J. Baker
Nature Published 2024/04/24

Summary:

This work built an angiosperm tree of life dated with 200 fossil calibrations, providing key insights into evolutionary relationships and diversification and shows the deep history and full complexity in the evolution of a megadiverse clade.

Neuroinflammation in Alzheimer disease
Michael T. Heneka;W. M. van der FlierFrank JessenJeroen HoozemannsD. ThalD. BocheF. BrosseronC. TeunissenHenrik ZetterbergAndreas H. JacobsPaul EdisonAlfredo RamirezC. CruchagaJean-Charles LambertA. R. LazaJ. Sanchez-MutA. FischerS. Castro-GomezT. SteinL. KleineidamM. WagnerJonas J. NeherC. CunninghamS. SinghraoM. PrinzChristopher K. GlassJ. SchlachetzkiO. ButovskyKilian L. KleemannPhilip L De JaegerH. ScheiblichGuy C. BrownGary E. LandrethMiguel MoutinhoJ. GrutzendlerDiego Gomez-NicolaR. McManusKatrin AndreassonChristina IsingDeniz KarabagDarren J. BakerSA LiddelowA. VerkhratskyMG TanseyA. MonsonegoLudwig AignerGuillaume DorothéeK. NaveMikael SimonsGabriela ConstantinN. RosenzweigAlberto PascualG. PetzoldJonathan KipnisCarmen VenegasMarco ColonnaJochen WalterAndrea J. TennerM. O’BanionJ. SteinertDouglas L. FeinsteinMagdalena SastreKiran BhaskarSoyon HongDorothy P. SchaferTodd E GoldeRichard R. RansohoffDavid MorganJ. BreitnerRenzo MancusoSean-Patrick Riechers
Nature Reviews Immunology Published 2024/12/09

Summary:

The authors explore the impact of extrinsic factors, such as brain trauma, diet and infections, and host-intrinsic factors, such as the activity of microglial cells and other immune, vascular and neuronal cell populations, on disease development and highlight emerging drugs that target this inflammatory component of Alzheimer disease.

Global meta-analysis shows action is needed to halt genetic diversity loss
Robyn E. Shaw;K. FarquharsonM. BrufordDavid J CoatesCarole P ElliottJ. MergeayK. OttewellG. SegelbacherSean HobanC. HvilsomS. Pérez-EsponaD. RuņģisF. AravanopoulosL. BertolaHelena CotrimKaren CoxV. Cubric-CurikR. EkblomJ. A. GodoyM. KonopińskiL. LaikreIsa-Rita M. RussoN. VeličkovićP. VergeerCarles VilàV. BrajkovicDavid L. FieldW. Goodall‐CopestakeFrank HailerTara HopleyF. ZachosP. C. AlvesA. BiedrzyckaR. BinksJ. BuiteveldE. BužanM. ByrneBarton HuntleyL. IacolinaN. KeehnenPeter KlingaAlexander KopatzSara KurlandJennifer A. LeonardC. ManfrinAlexis MarchesiniM. MillarP. Orozco‐terWengelJente OttenburghsDiana PosledovichP. B. SpencerN. TourvasTina Unuk NahbergerP. van HooftR. VerbylaitėCristiano VernesiC. Grueber
Nature Published 2025/01/29

Summary:

It is shown that within-population genetic diversity is being lost over timescales likely to have been impacted by human activities, and that some conservation actions may mitigate this loss.

Functional connectomics reveals general wiring rule in mouse visual cortex
Zhuokun Ding;Paul G. FaheyS. PapadopoulosEric Y. WangBrendan CeliiChristos PapadopoulosAlex KuninAndersen ChangJiakun FuZhiwei DingSaumil S. PatelKayla PonderJ. A. BaeA. BodorD. BrittainJ. BuchananD. BumbargerM. CastroErick CobosS. DorkenwaldL. ElabbadyA. HalageriZ. JiaC. JordanD. KapnerN. KemnitzS. KinnKisuk LeeKai LiR. LuT. MacrinaG. MahalingamE. MitchellS. S. MondalS. MuBarak NehoranS. PopovychC. Schneider-MizellW. SilversmithMarc M. TakenoR. TorresN. TurnerW. WongJingpeng WuW. YinSzi-chieh YuE. FroudarakisFabian H SinzH. SeungF. CollmanN. D. da CostaR. ReidEdgar Y. WalkerX. PitkowJacob ReimerA. Tolias
Nature Published 2025/04/01

Summary:

The MICrONS mouse visual cortex dataset shows that neurons with similar response properties preferentially connect, a pattern that emerges within and across brain areas and layers, and independently emerges in artificial neural networks where these ‘like-to-like’ connections prove important for task performance.

Salmonellosis: An Overview of Epidemiology, Pathogenesis, and Innovative Approaches to Mitigate the Antimicrobial Resistant Infections
Bibek Lamichhane;A. MawadMohamed SalehWilliam G KelleyPatrick J HarringtonCayenne W LovestadJessica AmezcuaMohamed M SarhanM. E. El ZowalatyH. RamadanMelissa MorganYosra A. Helmy
Antibiotics Published 2024/01/01

Summary:

This review investigates the disease characteristics observed in both humans and animals, antibiotic resistance, pathogenesis, and potential strategies for treatment and control of salmonellosis, emphasizing the most recent antibiotic-alternative approaches for infection control.

SenNet recommendations for detecting senescent cells in different tissues
V. Suryadevara;Adam D. HudginsAdarsh RajeshA. PappalardoA. KarpovaAmit K DeyAnn M HertzelAnthony AgudeloAzucena RochaBikem SoygurB. SchillingChase M CarverCristina Aguayo-MazzucatoDarren J. BakerD. BernlohrD. JurkDilyana B. MangarovaEllen M. QuardokusE. A. L. EnningaElizabeth L SchmidtFeng ChenFrancesca E DuncanFrancesco CambuliG. KaurGeorge A. KuchelGung LeeHeike E. Daldrup-LinkHélène MartiniHemali PhatnaniI. Al-NaggarIrfan RahmanJia NieJ. PassosJonathan C SilversteinJudith CampisiJulia T. WangKanako IwasakiKarina BarbosaKay MetisKerem NernekliLaura J. NiedernhoferLi DingLichao WangLisa C. AdamsRui LiuMadison L. DoolittleM. TenecheMarissa J. SchaferMing XuMohammadjavad HajipourMozhgan BoroumandNathan BasistyNicholas SloanNikolai SlavovOlena KuksenkoPaul RobsonPaul T GomezPeriklis VasilikosP. AdamsPriscila CarapetoQuan ZhuRamalakshmi RamasamyRolando Perez-LorenzoRong FanRunze DongR. MontgomeryS. ShaikhSanja VickovicShanshan YinShoukai KangSonja SuvakovSundeep KhoslaVesna D. GarovicVilas MenonYanxin XuYizhe SongYousin SuhZhixun DouNicola Neretti
Nature Reviews Molecular Cell Biology Published 2024/06/03

Summary:

Recommendations for detecting senescent cells in different tissues based on a comprehensive analysis of existing literature reporting senescence markers in 14 tissues in mice and humans are provided.

Whole-brain annotation and multi-connectome cell typing of Drosophila
P. Schlegel;Yijie YinA. S. BatesS. DorkenwaldK. EichlerPaul BrooksDaniel HanMarina GkantiaMárcia dos SantosE. MunnellyGriffin BadalamenteLaia Serratosa CapdevilaVarun A. SaneA. M. FragniereLadann KiassatM. W. PleijzierT. StürnerImaan F. M. TamimiChristopher R. DunneIrene SalgarellaA. JavierSiqi FangEric PerlmanTom KazimiersSridhar R. JagannathanArie MatsliahA. SterlingSzi-chieh YuClaire E. McKellarKrzysztof KrukDoug BlandZairene LenizoAustin BurkeK. WillieA. S. BatesNikitas SerafetinidisNashra HadjerolRyan WillieB. SilvermanJohn Anthony OchoJoshua BañezRey Adrian CandiladaJay GagerAnne KristiansenNelsie PanesArti YadavRemer TancontianShirleyjoy SeronaJet Ivan DolorosaKendrick Joules VinsonDustin GarnerRegine SalemAriel DagohoyJaime SkeltonMendell LopezThomas StocksAnjali PandeyDarrel Jay AkiatanJames HebditchCelia DavidD. SapkalShaina Mae MonungolhVarun A. SaneMark Lloyd PielagoMiguel AlberoJacquilyn LaudeMárcia dos SantosDavid S. DeutschZeba VohraKaiyu WangAllien Mae GogoEmil KindAlvin Josh MandahayChereb MartinezJohn David AsisChitra V NairDhwani PatelMarchan ManaytayClyde Angelo LimPhilip Lenard AmpoMichelle Darapan PantujanDaril BautistaRashmita RanaJansen SeguidoBhargavi ParmarJohn Clyde SaguimpaMerlin MooreM. W. PleijzierMark LarsonJoseph HsuItisha JoshiDhara KakadiyaAmalia BraunCathy PilapilKaushik ParmarQuinn X. VanderbeckChristopher R. DunneE. MunnellyChan Hyuk KangLena LörschJinmook LeeLucia KmecováGizem SancerChrista BakerJenna JoroffSteven CalleYashvi PatelOlivia SatoJanice SalocotFarzaan SalmanSebastian Molina-ObandoMai BuiMatthew LichtenbergerEdmark TamboboyKatie MolloyAlexis Santana-CruzAnthony HernandezSeongbong YuMarissa SorekArzoo DiwanMonika PatelTravis R. AikenSarah MorejohnSanna KoskelaTansy YangDaniel LehmannJonas ChojetzkiSangeeta SisodiyaSelden KoolmanPhilip K. ShiuSky ChoAnnika BastBrian ReicherMarlon BlanquartLucy HoughtonHyungjun ChoiMaria IoannidouMatt CollieJoanna EckhardtBenjamin GorkoLi GuoZhihao ZhengAlisa PohMarina LinIstván TaiszWes MurfinÁlvaro Sanz DíezNils ReinhardPeter W. GibbNidhi PatelSandeep KumarMinsik YunMegan WangDevon JonesLucas Encarnacion-RiveraAnnalena OswaldAkanksha JadiaMert ErginkayaNik DrummondLeonie WalterI. TastekinXin ZhongYuta MabuchiFernando J. Figueroa SantiagoUrja VermaNick ByrneEdda KunzeT. CrahanRyan MargossianHaein KimIliyan GeorgievFabianna SzorenyiAtsuko AdachiBenjamin BargeronTomke StürnerDamian D DemarestBurak GürAndrea N. BeckerRobert TurnbullA. MorrenAndrea SandovalAnthony Moreno-SanchezDiego A. PachecoEleni SamaraHaley CrokeAlex G. ThomsonConnor W. LaughlandS. DuttaPaula Guiomar Alarcón de AntónBinglin HuangPatricia PujolsIsabel HaberAmanda J. González-SegarraAlbert LinDaniel T. ChoeVeronika LukyanovaNino ManciniZequan LiuTatsuo S OkuboMiriam A. FlynnGianna VitelliM. LaturneyFeng LiShuo CaoCarolina Manyari-DiazHyunsoo YimAnh Duc LeKate MaierSeungyun YuYeonju NamDaniel BąbaAmanda AbusaifAudrey FrancisJesse GaykSommer S HuntressRaquel BarajasMindy KimXinyue CuiGabriella R. SterneAnna LiKeehyun ParkG. DempseyAlan MathewJinseong KimTaewan KimGuan-ting WuSerene DhawanMargarida BrotasCheng-hao ZhangShanice BaileyAlexander Del ToroKisuk LeeT. MacrinaC. Schneider-MizellS. PopovychOluwaseun OgedengbeRunzhe YangA. HalageriW. SilversmithStephan GerhardA. ChampionN. EcksteinDodam IhN. KemnitzM. CastroZ. JiaJingpeng WuEric MitchellBarak NehoranS. MuJ. A. BaeR. LuRyan MoreyKai KuehnerD. BrittainC. JordanDavid J. AndersonRudy BehniaSalil S. BidayeAlexander BorstEugenia ChiappeF. CollmanKenneth J. ColodnerAndrew M. DacksBarry J. DicksonJan FunkeDenise GarciaStefanie HampelV. HartensteinBassem HassanCharlotte Helfrich-ForsterWolf HuetterothJinseop S. KimSung Soo KimYoung-Joon KimJae Young KwonWei-Chung LeeG. LinneweberGaby MaimonRichard MannStéphane NoselliMichael J PankratzL. Prieto-GodinoJenny ReadMichael B ReiserKatie von ReynC. RibeiroKristin ScottA. SeedsM. SelchoM. SiliesJulie H. SimpsonS. WaddellMathias F. WernetRachel I. WilsonFred W. WolfZepeng YaoNilay YapiciMeet ZandawalaMarta CostaH. S. SeungMala MurthyD. BockG. Jefferis
Nature Published 2024/10/01

Summary:

A consensus cell type atlas for the fly brain provides both an intellectual framework and open-source toolchains for brain-scale comparative connectomics and provides evidence for functional homeostasis in the mushroom body through adjustments of the absolute amount of excitatory input.

Medicinal plants: bioactive compounds, biological activities, combating multidrug-resistant microorganisms, and human health benefits - a comprehensive review
M. El‐Saadony;A. SaadD. M. MohammedSameh A. KormaM. Y. AlshahraniA. E. AhmedEssam H. IbrahimHeba M. SalemS. S. AlkafaasAbdullah M. SaifS. S. ElkafasMohamed A. FahmyTaia A. Abd El-MageedMariam M. AbadyHanya Y. AssalMarawan K. El-TarabilyBetty T. MathewSynan F. AbuQamarKhaled A. El-TarabilySalam A. Ibrahim
Frontiers in Immunology Published 2025/04/28

Summary:

This current review aims to identify the most common pathogens threatening human health, analyze the factors contributing to the rise of drug-resistant microorganisms, and evaluate the widespread use of medicinal plants across various countries as alternative antibiotics, highlighting their unique mechanisms of antimicrobial resistance.

Phase I trial of hES cell-derived dopaminergic neurons for Parkinson’s disease
V. Tabar;H. SarvaA. LozanoA. FasanoS. KaliaK. YuC. BrennanY. MaS. PengD. EidelbergM. TomishimaS. IrionW. StempleN. AbidA. LampronL. StuderC. Henchcliffe
Nature Published 2025/04/16

Summary:

Bilateral grafts of cryopreserved human embryonic stem cell-derived dopaminergic neuron progenitor cells into the putamen of patients with Parkinson’s disease in a phase I clinical trial showed safety, improvements in off-drug motor function and graft survival at 18 months after transplant.

ROS-dependent S-palmitoylation activates cleaved and intact gasdermin D
Gang Du;L. HealyLiron DavidCaitlin WalkerT. El‐BabaCorinne A LutomskiByoungsook GohBowen GuXiong PiPascal DevantPietro FontanaYing DongXiyu MaRui MiaoA. BalasubramanianRobbins PuthenveetilAnirban BanerjeeHongbo R. LuoJonathan C. KaganSungwhan F. OhCarol V. RobinsonJudy LiebermanHao Wu
Nature Published 2024/04/10

Summary:

It is suggested that reversible palmitoylation is a checkpoint for pore formation by both GSDMD-NT and intact GSDMD that functions as a general switch for the activation of this pore-forming family.

Validation of biomarkers of aging
M. Moqri;Chiara M S HerzogJ. PoganikKejun YingJamie N. JusticeD. BelskyA. Higgins-ChenBrian H. ChenAlan A. CohenGeorg FuellenS. HäggR. MarioniMartin WidschwendterKristen FortneyPeter O. FedichevAlex ZhavoronkovN. BarzilaiJ. Lasky-SuDouglas P. KielBrian K. KennedySteven R CummingsP. SlagboomEric VerdinA. MaierV. SebastianoMichael P. SnyderV. GladyshevS. HorvathL. Ferrucci
Nature Medicine Published 2024/02/01

Summary:

Current efforts to evaluate the predictive validity of omic biomarkers of aging in population studies are reviewed, challenges in comparability and generalizability are discussed, and recommendations to facilitate future validation of biomarkers of aging are provided.

Correction to “Minimal information for studies of extracellular vesicles (MISEV2023): From basic to advanced approaches”
Delaram Khamari;Elena KhomyakovaAnastasia KhvorovaPeter KierulfKwang Pyo KimT. KislingerMikael KlingebornD. KlinkeMiroslaw KornekMaja M KosanovićÁ. KovácsEva-MariaKrämer-AlbersSusanne KrasemannMirja KrauseIgor V. KurochkinG. KusumaSören KuypersS. LaitinenScott M. LangevinLuciaR. LanguinoJoanne LanniganCecilia LässerLouise C. LaurentGregoryLavieuElisa Lázaro-IbáñezS. LayMyung-Shin LeeYi Xin Fiona LeeDebora S LemosMetka LenassiA. LeszczyńskaKeLiaoS. LibregtsE. LigetiRebecca LimSai Kiang LimAija LinēK. LinnemannstönsAlicia LlorenteCatherine A LombardMagdalenaJ. LorenowiczÁ. LörinczJ. LötvallJason LovettMichelle C. LowryXavier LoyerQuan LuBarbara LukomskaT. LunavatSybren L. N. MaasH. MalhiAntonio MarcillaJacopo MarianiJavier MariscalS. ElenaMartens-UzunovaLorena Martín-JaularM. C. MartínezVilma ReginaMartinsMathilde MathieuSuresh MathivananM. MaugeriK. LyndaMcGinnisM. McVeyD. MeckesKatie L MeehanInge MertensValentina R MinciacchiAndreas MöllerM. JørgensenAizeaMorales-KastresanaJess MorhayimF. MullierMaurizio MuracaLuca MusanteV. MussackD. MuthKathryn H. MyburghTanbirNajranaMuhammad NawazIrina NazarenkoP. NejsumChristian NeriTommaso NeriR. NieuwlandL. NimrichterJohn P. NolanN. HootenLorraine O’DriscollTina O’GradyA. O’LoghlenTakahiro OchiyaAlberto OrtizX. OsteikoetxeaOle ØstergaardJaesung ParkD.M. PegtelHéctor PeinadoF. PerutM. PfafflDonaldG. PhinneyBartijn C H PietersRyan C. PinkDavid S. PisetskyIva PolakovičováIvan K. H. PoonIlaria PradaLynn PulliamP. QuesenberryA. RadeghieriR. RaffaiStefania RaimondoJ. RakM. RamirezGraça RaposoMorsiS. RayyanF. RicklefsPaul D. RobbinsD. DavidRobertsSilvia C RodriguesEva RohdeSophie RomeK. RouschopA. RughettiAshley E RussellPaula SaáSusmita SahooCatherine SánchezJ. SaugstadMeike J SaulM. RaymondSchiffelersRaphael SchneiderT. H. SchøyenAaron ScottEriominaShahajShivani SharmaO. ShatnyevaFaezeh ShekariGanesh VilasShelkeAshok K. ShettyKiyotaka ShibaAgata SkowronekOrman L SnyderKate TimmsF. VerweijT. VisnovitzE. Zuba-Surma
Journal of Extracellular Vesicles Published 2024/05/01
Complexity of avian evolution revealed by family-level genomes
Josefin Stiller;Shaohong FengAl-Aabid ChowdhuryIker Rivas-GonzálezD. DuchêneQi FangYuan DengAlexey M. KozlovAlexandros StamatakisS. ClaramuntJacqueline M. T. NguyenSimon Y. W. HoB. FairclothJulia HaagPeter HoudeJ. CracraftM. BalabanU. MaiGuangii ChenRongsheng GaoChengran ZhouYulong XieZijian HuangZhen CaoZhi YanHuw A. OgilvieL. NakhlehBent LindowBenoit MorelJon FjeldsåP. HosnerR. D. da FonsecaBent PetersenJoseph A. TobiasTamás SzékelyJonathan D. KennedyA. H. ReeveA. LikerMartin StervanderAgostinho AntunesD. TietzeMads F. BertelsenFumin LeiCarsten RahbekGary R GravesM. SchierupTandy J. WarnowE. BraunM. GilbertErich D. JarvisS. MirarabGuojie Zhang
Nature Published 2024/04/01

Summary:

Sharp increases in effective population size, substitution rates and relative brain size following the Cretaceous–Palaeogene extinction event are discovered, supporting the hypothesis that emerging ecological opportunities catalysed the diversification of modern birds.

Emergence and interstate spread of highly pathogenic avian influenza A(H5N1) in dairy cattle
Thao-Quyen Nguyen;Carl R. HutterAlexey MarkinMegan N. ThomasKristina LantzM. KillianGarrett M. JanzenSriram VijendranSanket WagleBlake InderskiDrew R. MagstadtGanwu LiD. DielElisha A FryeKiril M. DimitrovA. SwinfordAlexis C. ThompsonKevin R. SnevikD. L. SuarezE. SpackmanSteven M. LakinSara C. AholaKammy R. JohnsonA. BakerS. Robbe-AustermanMia K. TorchettiTavis K. Anderson
bioRxiv Published 2024/05/01

Summary:

The genomic analysis and epidemiological investigation showed that a reassortment event in wild bird populations preceded a single wild bird-to-cattle transmission episode of H5N1 HPAI within dairy cattle, increasing the risk for infection and subsequent spread of the virus to human populations.

Single-cell multiregion dissection of Alzheimer’s disease
Hansruedi Mathys;Carles A. BoixL. AkayZ. XiaJ. Dávila-VelderrainAyesha P. NgXueqiao JiangGhada AbdelhadyK. GalaniJulio ManteroNeil BandBenjamin T JamesSudhagar BabuFabiola Galiana-MelendezKate LouderbackD. ProkopenkoRudolph E. TanziDavid A. A. BennettLi-Huei TsaiM. Kellis
Nature Published 2024/07/24

Summary:

A single-cell transcriptomic atlas of six different brain regions in the aged human brain, covering 1.3 million cells from 283 post-mortem human brain samples across 48 individuals with and without Alzheimer’s disease is reported.

Cancer cell plasticity: from cellular, molecular, and genetic mechanisms to tumor heterogeneity and drug resistance
G. Bhat;Itty SethiHana Q. SadidaBilal RahRashid MirNaseh A. AlgehainyI. AlbalawiTariq Ahmad MasoodiG. SubbarajFarrukh JamalMayank SinghRakesh KumarM. MachaShahab UddinA. A. AkilMohammad HarisAjaz A. Bhat
Cancer Metastasis Reviews Published 2024/02/08

Summary:

The delineation of cellular, molecular, and genetic mechanisms underlying tumor heterogeneity and drug resistance seeks to contribute substantially to the progress in cancer therapeutics and the advancement of precision medicine, ultimately enhancing the prospects for effective cancer treatment and patient outcomes.

T Cell Exhaustion.
Andrew Baessler;Dario A A Vignali
Annual review of immunology Published 2024/01/02

Summary:

The process of T cell exhaustion is reviewed, detailing the key characteristics and drivers as well as highlighting the current understanding of the underlying transcriptional and epigenetic programming.

Who owns this site?

Article Galaxy Pages is a free service from Research Solutions, a company that offers access to content in collaboration with publishing partners, online repositories and discovery services.