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Accurate structure prediction of biomolecular interactions with AlphaFold 3
Josh Abramson;Jonas AdlerJack DungerRichard EvansTim GreenA. PritzelOlaf RonnebergerLindsay WillmoreAndrew J BallardJoshua BambrickSebastian BodensteinDavid A EvansChia-Chun HungMichael O’NeillD. ReimanKathryn TunyasuvunakoolZachary WuAkvilė ŽemgulytėEirini ArvanitiCharles BeattieOttavia BertolliAlex BridglandAlexey CherepanovMiles CongreveA. Cowen-RiversAndrew CowieMichael FigurnovFabian B FuchsHannah GladmanRishub JainYousuf A. KhanCaroline M R LowKuba PerlinAnna PotapenkoPascal SavySukhdeep SinghA. SteculaAshok ThillaisundaramCatherine TongSergei YakneenEllen D. ZhongMichal ZielinskiAugustin ŽídekV. BapstPushmeet KohliMax JaderbergD. HassabisJ. Jumper
Nature Published 2024/05/08

Summary:

The new AlphaFold model demonstrates substantially improved accuracy over many previous specialized tools: far greater accuracy for protein–ligand interactions compared with state-of-the-art docking tools, much higher accuracy for protein–nucleic acid interactions compared with nucleic-acid-specific predictors and substantially higher antibody–antigen prediction accuracy.

MetaboAnalyst 6.0: towards a unified platform for metabolomics data processing, analysis and interpretation
Zhiqiang Pang;Yao LuGuangyan ZhouFiona HuiLei XuCharles ViauA. SpigelmanPatrick E. MacDonaldD. WishartShuzhao LiJianguo Xia
Nucleic Acids Research Published 2024/04/08
PubChem 2025 update.
Sunghwan Kim;Jie ChenTiejun ChengAsta GindulyteJiali HeSiqian HeQingliang LiBenjamin A ShoemakerPaul A ThiessenBo YuLeonid ZaslavskyJian ZhangEvan E. Bolton
Nucleic acids research Published 2024/11/18

Summary:

In the past two years, significant updates were made to PubChem, including the co-occurrence data underlying the literature knowledge panel, enabling users to exploit semantic web technologies to explore entity relationships based on the co-occurrences in the scientific literature.

The interplay between cytokines, inflammation, and antioxidants: mechanistic insights and therapeutic potentials of various antioxidants and anti-cytokine compounds.
Nitish Kumar Bhol;M. M. BhanjadeoAnup Kumar SinghU. C. DashRakesh Ranjan OjhaSanatan MajhiA. DuttaroyA. B. Jena
Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie Published 2024/07/24

Summary:

A comprehensive understanding of cytokine-mediated inflammatory pathways and the interplay with antioxidants is paramount for developing natural therapeutic agents targeting inflammation-related disorders and helping to improve clinical outcomes and enhance the quality of life for patients.

Elimination of Ni(II) from wastewater using metal-organic frameworks and activated algae encapsulated in chitosan/carboxymethyl cellulose hydrogel beads: Adsorption isotherm, kinetic, and optimizing via Box-Behnken design optimization.
G. Al-Hazmi;Nadia H. ElsayedJ. AlnawmasiKhadra B. AlomariA. H. AlessaShareefa A AlshareefA. A. El-Bindary
International journal of biological macromolecules Published 2025/01/01
Abundant ammonia and nitrogen-rich soluble organic matter in samples from asteroid (101955) Bennu
D. Glavin;J. DworkinC. AlexanderJ. AponteA. BaczynskiJ. J. BarnesH. BechtelE. L. BergerAaron S. BurtonP. CaselliAngela H ChungS. ClemettG. CodyG. DominguezJ. ElsilaKendra K. FarnsworthD. FoustoukosKatherine H. FreemanY. FurukawaZ. GainsforthH. GrahamT. GrassiB. M. GiulianoV. HamiltonP. HaenecourP. R. HeckA. HofmannC. HouseYongsong HuangH. KaplanL. KellerBumsoo KimT. KogaM. LissH. MclainM. A. MarcusM. MatneyT. McCoyOphélie M McIntoshA. MojarroH. NaraokaA. NguyenM. NuevoJ. NuthY. ObaE. ParkerT. PeretyazhkoS. SandfordEwerton SantosP. Schmitt-KopplinF. SeguinD. SimkusAnique ShahidY. TakanoK. Thomas-KeprtaHavishk TripathiGabriella WeissYuke ZhengN. LunningK. RighterH. C. ConnollyD. Lauretta
Nature Astronomy Published 2025/01/29
A novel antibiotic class targeting the lipopolysaccharide transporter
C. Zampaloni;Patrizio MatteiKonrad BleicherLotte WintherClaudia ThäteChristian BucherJean-Michel AdamAlexander AlanineKurt E AmreinVadim BaidinChristoph BieniossekCaterina BissantzFranziska BoessCarina CantrillThomas ClairfeuilleFabian DeyPatrick Di GiorgioPauline du CastelDavid DylusPawel DzygielAntonio FeliciF. García-AlcaldeA. HaldimannMatthew LeipnerSemen A. LeynS. LouvelPauline MissonA. OstermanKaranbir S. PahilSébastien RigoAdrian SchäublinSebastian ScharfPetra SchmitzTheodor StollAndrej TraunerS. ZoffmannD. KahneJohn A T YoungMichael A LobritzKenneth A Bradley
Nature Published 2024/01/03

Summary:

Tethered macrocyclic peptide antibiotics with potent antibacterial activity against carbapenem-resistant Acinetobacter baumannii are identified and optimization of tethered macrocyclic peptide (MCP) antibiotics with potent antibacterial activity against CRAB are reported.

ROS-dependent S-palmitoylation activates cleaved and intact gasdermin D
Gang Du;L. HealyLiron DavidCaitlin WalkerT. El‐BabaCorinne A LutomskiByoungsook GohBowen GuXiong PiPascal DevantPietro FontanaYing DongXiyu MaRui MiaoA. BalasubramanianRobbins PuthenveetilAnirban BanerjeeHongbo R. LuoJonathan C. KaganSungwhan F. OhCarol V. RobinsonJudy LiebermanHao Wu
Nature Published 2024/04/10

Summary:

It is suggested that reversible palmitoylation is a checkpoint for pore formation by both GSDMD-NT and intact GSDMD that functions as a general switch for the activation of this pore-forming family.

Precious Metal Free Hydrogen Evolution Catalyst Design and Application
A. A. Feidenhans'l;Yagya N. RegmiChao WeiDong XiaJ. KibsgaardLaurie A King
Chemical Reviews Published 2024/04/25
Ultra-fast label-free quantification and comprehensive proteome coverage with narrow-window data-independent acquisition
Ulises H. Guzmán;Ana Martínez-ValZilu YeEugen DamocT. ArreyA. PashkovaSantosh RenuseE. DenisovJ. PetzoldtAmelia C. PetersonFlorian HarkingOle ØstergaardRasmus RydbirkSusana AznarH. StewartY. XuanDaniel HermansonS. HorningChristian HockAlexander A. MakarovV. ZabrouskovJ. Olsen
Nature Biotechnology Published 2024/02/01

Summary:

The narrow-window data-independent acquisition (nDIA) strategy consisting of high-resolution MS1 scans with parallel tandem MS/MS scans of ~200 Hz using 2-Th isolation windows is presented, dissolving the differences between data-dependent and -independent methods.

A comprehensive review of recent advances in alkaline water electrolysis for hydrogen production
S. Sebbahi;A. AssilaA. Alaoui BelghitiS. LaasriSavaş KayaE. HlilSamir RachidiA. Hajjaji
International Journal of Hydrogen Energy Published 2024/09/01
Benign separation, adsorption, and recovery of rare-earth Yb(III) ions with specific ligand-based composite adsorbent
Mohammed Sohrab Hossain;M. A. ShenashenMrs Eti AwualAriyan Islam RehanAdiba Islam RaseeR. WaliullahK. KubraM. SalmanM. SheikhM. HasanM. HasanAminul IslamM. KhalequeHadi M. MarwaniKhalid A. AlzahraniAbdullah M AsiriMohammed M. RahmanM. Awual
Process Safety and Environmental Protection Published 2024/05/01
Advances in silver nanoparticles: a comprehensive review on their potential as antimicrobial agents and their mechanisms of action elucidated by proteomics
Adriana S. Rodrigues;J.G.S. BatistaMurilo Á. V. RodriguesV. ThipeL. A. MinariniPatricia S. LopesA. B. Lugão
Frontiers in Microbiology Published 2024/07/31

Summary:

The proteomic mechanisms by which AgNPs exert their antimicrobial effects are investigated, with a special focus on their activity against planktonic bacteria and in biofilms and the issue of resistance to antibiotics is addressed.

Unraveling the Infrared Spectrum of Graphene Oxide
Vasily Brusko;A. KhannanovA. RakhmatullinAyrat M. Dimiev
Carbon Published 2024/07/01
Tuning the solvation structure with salts for stable sodium-metal batteries
Jiarui He;A. BhargavLaisuo SuJulia LambJohn S. OkasinskiWoochul ShinA. Manthiram
Nature Energy Published 2024/02/19
Effect of metal organic framework alginate aerogel composite sponge on adsorption of tartrazine from aqueous solutions: Adsorption models, thermodynamics and optimization via Box-Behnken design
M. El‐Desouky;Abdulaziz A. AlayyafiG. Al-HazmiA. A. El-Bindary
Journal of Molecular Liquids Published 2024/04/01
Where the rubber meets the road: Emerging environmental impacts of tire wear particles and their chemical cocktails
P. Mayer;Kelly D. MoranEzra L. MillerS. BranderStacey L. HarperManuel García-JaramilloV. Carrasco-NavarroK. HoRobert M. BurgessLeah M. Thornton HamptonElise F. GranekMargaret McCauleyJ. McIntyreEdward P. KolodziejXimin HuA. WilliamsBarbara A. BeckinghamMiranda E. JacksonRhea D Sanders-SmithChloe L. FenderGeorge A KingMichael A. BollmanS. KaushalB. CunninghamS. HuttonJackelyn LangHeather V GossSamreen SiddiquiR. SuttonDiana LinM. Mendez
The Science of the total environment Published 2024/03/01
Advancements in nanomaterials for nanosensors: a comprehensive review
Moustafa A. Darwish;Walaa Abd‐ElaziemA. ElsheikhAbdelhameed A. A. Zayed
Nanoscale Advances Published 2024/05/24
Synthesis of high-performance supercapacitor electrode materials by hydrothermal route based on ZnSe/MnSe composite
Mukhtiar Hussain;B. M. AlotaibiA. AlrowailyHaifa A. AlyousefM. AlotibyM. AbdullahA. Al-sehemiA. HenaishZubair AhmadSalma Aman
Journal of Physics and Chemistry of Solids Published 2024/02/01
Synthesis and characterization of metal–organic frameworks based on thorium for the effective removal of 2,4-dichlorophenylacetic pesticide from water: Batch adsorption and Box-Behnken Design optimization, and evaluation of reusability
Amnah Mohammed Alsuhaibani;Abdulaziz A. AlayyafiLamia A. AlbedairM. El‐DesoukyA. A. El-Bindary
Journal of Molecular Liquids Published 2024/02/01
Advanced microcrystalline nanocellulose-based nanofiltration membranes for the efficient treatment of wastewater contaminated with cationic dyes
Ayman K. El‐Sawaf;A. A. NassarA. A. El Aziz ElfikyMahmoud F. Mubarak
Polymer Bulletin Published 2024/05/14
A new antibiotic traps lipopolysaccharide in its intermembrane transporter
Karanbir S. Pahil;Morgan S A GilmanVadim BaidinThomas ClairfeuillePatrizio MatteiChristoph BieniossekFabian DeyDieter MuriRemo BaettigMichael A LobritzKenneth A BradleyA. KruseD. Kahne
Nature Published 2024/01/03

Summary:

These findings identify an unusual mechanism of lipid transport inhibition, reveal a druggable conformation of the Lpt transporter and provide the foundation for extending this class of antibiotics to other Gram-negative pathogens.

Guava seed activated carbon loaded calcium alginate aerogel for the adsorption of diclofenac sodium: Characterization, isotherm, kinetics, and optimization via Box-Behnken design.
G. Al-Hazmi;Abdulaziz A. AlayyafiM. El‐DesoukyA. A. El-Bindary
International journal of biological macromolecules Published 2024/02/01
Chitosan-nano CuO composite for removal of mercury (II): Box-Behnken design optimization and adsorption mechanism.
G. Al-Hazmi;Abdulaziz A. AlayyafiM. El‐DesoukyA. A. El-Bindary
International journal of biological macromolecules Published 2024/01/01
Overview of Developments in the MRCC Program System
Dávid Mester;P. NagyJózsef CsókaLászló Gyevi-NagyP. SzabóRéka HorváthKlára PetrovBence HégelyBence LadóczkiGyula SamuBalázs D. LőrinczMihály Kállay
The Journal of Physical Chemistry. a Published 2025/02/16
Coordination environment dominated catalytic selectivity of photocatalytic hydrogen and oxygen reduction over switchable gallium and nitrogen active sites
Chunqiang Zhuang;Weiming LiYuan ChangShijie LiYihong ZhangYuanli LiJunfeng GaoGe ChenZhenhui Kang
Journal of Materials Chemistry A
Advances in Understanding Cisplatin-Induced Toxicity: Molecular Mechanisms and Protective Strategies.
Elsayed A. Elmorsy;Sameh SaberRabab S. HamadM. A. Abdel-ReheimA. El‐kottMohammed A. AlShehriK. MorsySalama A. SalamaMahmoud E. Youssef
European journal of pharmaceutical sciences : official journal of the European Federation for Pharmaceutical Sciences Published 2024/10/01

Summary:

This review aims to provide a comprehensive overview of cisplatin toxicity, encompassing its underlying mechanisms, risk factors, and emerging therapeutic strategies, and highlights the emerging therapeutic strategies that could be applied to minimize cisplatin-induced toxicities.

Chemistry, bioavailability, bioactivity, nutritional aspects and human health benefits of polyphenols: A comprehensive review.
M. El‐Saadony;Tao YangA. SaadS. S. AlkafaasS. S. ElkafasGehad S. EldeebD. M. MohammedH. SalemSameh A. KormaSamah A. LoutfyMohammad Y. AlshahranA. E. AhmedWalid F. A. MosaTaia A. Abd El-MageedAtef F. AhmedMohamed A FahmyMarawan K. El-TarabilyReda M. MahmoudSynan F. AbuQamarKhaled A. El-TarabilyJ. M. Lorenzo
International journal of biological macromolecules Published 2024/07/01

Summary:

The mechanisms by which complex polyphenols act as antioxidative, anti-inflammatory, and anticancer agents have been discussed and their role in food enrichment is discussed.

A critical view about use of scavengers for reactive species in heterogeneous photocatalysis
F. Puga;J. NavíoM. C. Hidalgo
Applied Catalysis A: General Published 2024/07/01
Enhanced photocatalytic activity of green synthesized zinc oxide nanoparticles using low-cost plant extracts
Sahar A. Mousa;D. A. WissaH. HassanA. A. EbnalwaledS. A. Khairy
Scientific Reports Published 2024/07/19
High performance lanthanum-doped nickel cobalt ferrites on titanium carbide MXene electrode material for superior hybrid device and precision creatinine sensing
M. Waris;Nimra MuzaffarMuhammad Azhar MumtazA. AfzalM. IqbalSohail MumtazMuhammad AliIbrahim A. AlaraidhM. OklaShaik Abdul Munnaf
Applied Physics A Published 2025/02/24
Nanocrystal Assemblies: Current Advances and Open Problems.
Carlos L Bassani;Greg van AndersU. BaninD. BaranovQian ChenMarjolein DijkstraMichael S. DimitriyevEfi EfratiJ. FaraudoO. GangN. GastonR. GolestanianG. I. Guerrero-GarcíaMichael GruenwaldA. Haji-AkbariMaria IbáñezM. KargTobias KrausByeongdu LeeReid C. Van LehnR. MacfarlaneB. MognettiA. NikoubashmanSaeed OsatO. PrezhdoGrant M. RotskoffL. SaizAn-Chang ShiS. SkrabalakI. SmalyukhMario TagliazucchiD. TalapinA. TkachenkoSergei TretiakD. VakninA. Widmer‐CooperG. WongXingchen YeShan ZhouE. RabaniMichael EngelA. Travesset
ACS nano Published 2024/05/30
Structure-Property-Performance Relationship of Vanadium- and Manganese-based Metal-Organic Frameworks and their derivatives for Energy Storage and Conversion Applications
Reza Abazari;Soheila SanatiA. K. NanjundanQiyou WangDeepak P. DubalMin Liu
Journal of Materials Chemistry A
Highly selective and sensitive detection of volatile organic compounds using long wavelength InAs-based quantum cascade lasers through quartz-enhanced photoacoustic spectroscopy
Kumar Kinjalk;Francesco PaciollaBo SunA. ZifarelliG. MenduniM. GiglioHongpeng WuLei DongD. AyacheDavide PintoA. VicetA. BaranovP. PatimiscoA. SampaoloV. Spagnolo
Applied Physics Reviews Published 2024/06/01
Sustainable polymeric adsorbents for adsorption-based water remediation and pathogen deactivation: a review
Huda Alkhaldi;S. AlharthiSalha AlharthiHind A AlGhamdiYasmeen M. AlZahraniSafwat A. MahmoudL. G. AminN. H. Al-ShaalanWaleed E. BoraieMohmed S AttiaS. A. Al-GahtanyN. AldaleeliM. GhobashyA. SharshirM. MadaniReem DarweshSana F. Abaza
RSC Advances Published 2024/10/17
A machine learning and DFT assisted analysis of benzodithiophene based organic dyes for possible photovoltaic applications
Cihat Güleryüz;S. SumrraA. HassanAyesha MohyuddinA. S. WaheebMasar A. AwadAyad R. JalfanSadaf NoreenHussein A. K. KyhoieshI. H. El Azab
Journal of Photochemistry and Photobiology A: Chemistry
Nanotubes/nanorods-like structures of La-doped ZnO for degradation of Methylene Blue and Ciprofloxacin
A. Soares;F. P. AraújoJ. OsajimaY. GuerraB. C. VianaR. Peña-Garcia
Journal of Photochemistry and Photobiology A: Chemistry Published 2024/01/01
Rationally designed dual cocatalysts on ZnIn2S4 nanoflowers for photoredox coupling of benzyl alcohol oxidation with H2 evolution
Yu Wei;Yuzheng WuJun WangYonghui WuZonglin WengWeiya HuangKai YangJia-Lin ZhangQi LiKangqiang LuBin Han
Journal of Materials Chemistry A
Enhancing photocatalytic performance of Co-TiO2 and Mo-TiO2-based catalysts through defect engineering and doping: A study on the degradation of organic pollutants under UV light
Mubarak A. Eldoma;Saleh O. AlaswadMohamed A. MahmoudIsam Y. QudsiehMohamed HassanOmer Y. BakatherGaber A. ElawadiAhmed F. F. AbouatiaaMohammad S. AlomarMustafa S. ElhassanIslam G. AlhindawyZeyad M. Ahmed
Journal of Photochemistry and Photobiology A: Chemistry Published 2024/01/01
Effective synthesis and characterization of citric acid cross-linking of modified ferrous metal-organic framework and chitosan nanocomposite sponge for Th(IV) elimination: Adsorption isotherms, kinetic analysis, and optimization by Box-Behnken design.
G. H. Al-Hazmi;Lamia A. AlbedairRaedah A. S. AlatawiA. M. AlsuhaibaniA. BukhariA. A. El-Bindary
International journal of biological macromolecules Published 2024/10/01
Facile synthesis of new metal-organic framework/chitosan composite sponge for Hg(II) removal: Characterization, adsorption efficiency, and optimization using Box-Behnken design.
Zehba A. Al‐Ahmed;Mona A. AlhasaniM. AljohaniRazan M. SnariHawra A. AlghashamN. M. AlatawiA. KeshkNashwa M. El‐Metwaly
International journal of biological macromolecules Published 2024/01/01
Efficient lead ion removal from aqueous solutions for wastewater treatment using a novel cross-linked alginate-rice husk ash-graphene oxide-chitosan nanocomposite.
A. A. Nassar;Mahmoud F. MubarakA. K. El-SawafM. A. ZayedMohamed Hemdan
International journal of biological macromolecules Published 2024/11/01
Core-shell flame retardants based on Chitosan@MMT coated ammonia polyphosphate for enhancing flame retardancy of polyurethane
Con Shi;Mei WanJiahao DuanXiaodong QianHonglei CheJian LiFei RenJunyi LiLing Yang
Composites Part A: Applied Science and Manufacturing Published 2024/01/01
Locally weighted linear regression–optimized graphene–metal metasurface sensor for high-sensitivity organic compound detection in terahertz regime
Jacob Wekalao;A. MehaneyBashir SalahMostafa R. AbukhadraHussein A. Elsayed
Zeitschrift für Naturforschung A Published 2025/04/07
Microfluidic synthesis of lipid-based nanoparticles for drug delivery: recent advances and opportunities.
Sima Mehraji;D. DeVoe
Lab on a chip Published 2024/01/02

Summary:

An assessment of the current state of microfluidic technologies for lipid-based nanoparticle and nanomedicine production is presented, with an emphasis on the capabilities of microfluidic systems for controlling nanoparticle size and size distribution.

Colorimetric and fluorometric dual-mode sensing of cefadroxil based on peroxidase-like activity of iron and nitrogen co-doped carbon dots.
Shaker T. Alsharif;A. B. H. AliMohamed M. El-wekil
Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy Published 2025/04/28
Synergistic effects of Al3+/La3+ co-doped ZnO photocatalysts for enhanced removal of Remazol red dye and Diclofenac in aqueous solutions
Débora A. Sales;A. JerônimoPollyana TrigueiroW. AlbuquerqueR. BarbosaL. NevesL.C. AlmeidaY. GuerraJ. OsajimaE. Padrón-HernándezB. C. VianaR. Peña-Garcia
Colloids and Surfaces A: Physicochemical and Engineering Aspects Published 2025/01/01
Highly selective and efficient AIEE active fluorescence probe for the detection of doxycycline in biological and environmental samples with extensive DFT support.
Abdul Majeed;S. ShahzadMohammed A. AssiriKhanzadi Omama KhanHani RabaleAlam Shabbir
Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy Published 2025/01/01
Triazine based probes for nitroaniline: Comprehensive optical and DFT approach for dual-phase detection and fingerprint sensing.
Alam Shabbir;Muhammad Mazhar IqbalMohammed A. AssiriTayyeba JavidAqsa PervaizAbid Hussain KhanAbbas HassanS. Shahzad
Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy Published 2025/02/01
N, P co-doped graphene-supported transition monometallic nanoparticles for highly efficient hydrogen evolution by acid electrolysis of water
Fengshun Wu;Li ZengAn PeiYingliang FengLihua Zhu
Journal of Materials Chemistry A

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