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Accurate structure prediction of biomolecular interactions with AlphaFold 3
Josh Abramson;Jonas AdlerJack DungerRichard EvansTim GreenA. PritzelOlaf RonnebergerLindsay WillmoreAndrew J BallardJoshua BambrickSebastian BodensteinDavid A EvansChia-Chun HungMichael O’NeillD. ReimanKathryn TunyasuvunakoolZachary WuAkvilė ŽemgulytėEirini ArvanitiCharles BeattieOttavia BertolliAlex BridglandAlexey CherepanovMiles CongreveA. Cowen-RiversAndrew CowieMichael FigurnovFabian B FuchsHannah GladmanRishub JainYousuf A. KhanCaroline M R LowKuba PerlinAnna PotapenkoPascal SavySukhdeep SinghA. SteculaAshok ThillaisundaramCatherine TongSergei YakneenEllen D. ZhongMichal ZielinskiAugustin ŽídekV. BapstPushmeet KohliMax JaderbergD. HassabisJ. Jumper
Nature Published 2024/05/08

Summary:

The new AlphaFold model with a substantially updated diffusion-based architecture that is capable of predicting the joint structure of complexes including proteins, nucleic acids, small molecules, ions and modified residues is described, showing that high-accuracy modelling across biomolecular space is possible within a single unified deep-learning framework.

MetaboAnalyst 6.0: towards a unified platform for metabolomics data processing, analysis and interpretation
Zhiqiang Pang;Yao LuGuangyan ZhouFiona HuiLei XuCharles ViauA. SpigelmanPatrick E. MacDonaldD. WishartShuzhao LiJianguo Xia
Nucleic Acids Research Published 2024/04/08
PubChem 2025 update.
Sunghwan Kim;Jie ChenTiejun ChengAsta GindulyteJiali HeSiqian HeQingliang LiBenjamin A ShoemakerPaul A ThiessenBo YuLeonid ZaslavskyJian ZhangEvan E. Bolton
Nucleic acids research Published 2024/11/18

Summary:

In the past two years, significant updates were made to PubChem, including the co-occurrence data underlying the literature knowledge panel, enabling users to exploit semantic web technologies to explore entity relationships based on the co-occurrences in the scientific literature.

Benign separation, adsorption, and recovery of rare-earth Yb(III) ions with specific ligand-based composite adsorbent
Mohammed Sohrab Hossain;M. A. ShenashenMrs Eti AwualAriyan Islam RehanAdiba Islam RaseeR. WaliullahK. KubraM. SalmanM. SheikhM. HasanM. HasanAminul IslamM. KhalequeHadi M. MarwaniKhalid A. AlzahraniAbdullah M AsiriMohammed M. RahmanM. Awual
Process Safety and Environmental Protection Published 2024/05/01
The interplay between cytokines, inflammation, and antioxidants: mechanistic insights and therapeutic potentials of various antioxidants and anti-cytokine compounds.
Nitish Kumar Bhol;M. M. BhanjadeoAnup Kumar SinghU. C. DashRakesh Ranjan OjhaSanatan MajhiA. DuttaroyA. B. Jena
Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie Published 2024/07/24

Summary:

A comprehensive understanding of cytokine-mediated inflammatory pathways and the interplay with antioxidants is paramount for developing natural therapeutic agents targeting inflammation-related disorders and helping to improve clinical outcomes and enhance the quality of life for patients.

Ultra-fast label-free quantification and comprehensive proteome coverage with narrow-window data-independent acquisition
Ulises H. Guzmán;Ana Martínez-ValZilu YeEugen DamocT. ArreyA. PashkovaSantosh RenuseE. DenisovJ. PetzoldtAmelia C. PetersonFlorian HarkingOle ØstergaardRasmus RydbirkSusana AznarH. StewartY. XuanDaniel HermansonS. HorningChristian HockAlexander A. MakarovV. ZabrouskovJ. Olsen
Nature Biotechnology Published 2024/02/01

Summary:

The narrow-window data-independent acquisition (nDIA) strategy consisting of high-resolution MS1 scans with parallel tandem MS/MS scans of ~200 Hz using 2-Th isolation windows is presented, dissolving the differences between data-dependent and -independent methods.

A novel antibiotic class targeting the lipopolysaccharide transporter
C. Zampaloni;Patrizio MatteiKonrad BleicherLotte WintherClaudia ThäteChristian BucherJean-Michel AdamAlexander AlanineKurt E AmreinVadim BaidinChristoph BieniossekCaterina BissantzFranziska BoessCarina CantrillThomas ClairfeuilleFabian DeyPatrick Di GiorgioPauline du CastelDavid DylusPawel DzygielAntonio FeliciF. García-AlcaldeA. HaldimannMatthew LeipnerSemen A. LeynSéverine LouvelPauline MissonA. OstermanKaranbir S. PahilSébastien RigoAdrian SchäublinSebastian ScharfPetra SchmitzTheodor StollAndrej TraunerS. ZoffmannD. KahneJohn A T YoungMichael A LobritzKenneth A Bradley
Nature Published 2024/01/03

Summary:

The identification and optimization of tethered macrocyclic peptide (MCP) antibiotics with potent antibacterial activity against CRAB are reported, and zosurabalpin, a clinical candidate derived from the MCP class, effectively treats highly drug-resistant contemporary isolates of CRAB both in vitro and in mouse models of infection.

Precious Metal Free Hydrogen Evolution Catalyst Design and Application
A. A. Feidenhans'l;Yagya N. RegmiChao WeiDong XiaJ. KibsgaardLaurie A King
Chemical Reviews Published 2024/04/25
Synthesis and characterization of metal–organic frameworks based on thorium for the effective removal of 2,4-dichlorophenylacetic pesticide from water: Batch adsorption and Box-Behnken Design optimization, and evaluation of reusability
Amnah Mohammed Alsuhaibani;AbdulAziz A. AlayyafiLamia A. AlbedairM. El‐DesoukyA. A. El-Bindary
Journal of Molecular Liquids Published 2024/02/01
ROS-dependent S-palmitoylation activates cleaved and intact gasdermin D.
Gang Du;L. HealyLiron DavidCaitlin WalkerT. El‐BabaCorinne A LutomskiByoungsook GohBowen GuXiong PiPascal DevantPietro FontanaYing DongXiyu MaRui MiaoA. BalasubramanianRobbins PuthenveetilAnirban BanerjeeH. LuoJonathan C. KaganSungwhan F. OhCarol V. RobinsonJudy LiebermanHao Wu
Nature Published 2024/04/10

Summary:

It is suggested that reversible palmitoylation is a checkpoint for pore formation by both GSDMD-NT and intact GSDMD that serves as a general switch for the activation of this pore-forming family.

Effect of metal organic framework alginate aerogel composite sponge on adsorption of tartrazine from aqueous solutions: Adsorption models, thermodynamics and optimization via Box-Behnken design
M. El‐Desouky;AbdulAziz A. AlayyafiG. Al-HazmiA. A. El-Bindary
Journal of Molecular Liquids Published 2024/04/01
Solution-based Cu+ transient species mediate the reconstruction of copper electrocatalysts for CO2 reduction
Jan Vavra;Gaétan P. L. RamonaF. DattilaA. KormányosTatiana PriamushkoPetru P. AlbertiniA. LoiudiceS. CherevkoN. LópezR. Buonsanti
Nature Catalysis Published 2024/01/03
Tuning the solvation structure with salts for stable sodium-metal batteries
Jiarui He;A. BhargavLaisuo SuJulia LambJohn S. OkasinskiWoochul ShinA. Manthiram
Nature Energy Published 2024/02/19
Efficient adsorption of fluorescein dye from aqueous solutions by Al/Th-MOF bimetal-organic frameworks: Adsorption isotherm, kinetics, DFT computation, and optimization via Box-Behnken design
N. Alshammari;J. AlnawmasiAlya M AlotaibiO. A. AlshammariMay Abdullah AbomutiNadia H. ElsayedA. A. El-Bindary
Process Safety and Environmental Protection Published 2024/10/01
Efficient removal of tetracycline by VCo-layered double hydroxide encapsulated with chitosan: Optimization via Box-Behnken design, and thermodynamics.
H. Siddiq;M. M. MadkhaliReem GhubayraAbdel-Nasser M A AlaghazM. El‐DesoukyM. A. El‐BindaryA. A. El-Bindary
International journal of biological macromolecules Published 2025/01/01
Electrolyte-assisted polarization leading to enhanced charge separation and solar-to-hydrogen conversion efficiency of seawater splitting
Yiyang Li;Hui ZhouSonghua CaiD. PrabhakaranWentian NiuA. LargeG. HeldRobert A. TaylorXin‐Ping WuS. Tsang
Nature Catalysis Published 2024/01/04
Addendum: Accurate structure prediction of biomolecular interactions with AlphaFold 3
Josh Abramson;Jonas AdlerJack DungerRichard EvansTim GreenA. PritzelOlaf RonnebergerLindsay WillmoreAndrew J BallardJoshua BambrickSebastian BodensteinDavid A EvansChia-Chun HungMichael O’NeillD. ReimanKathryn TunyasuvunakoolZachary WuAkvilė ŽemgulytėEirini ArvanitiCharles BeattieOttavia BertolliAlex BridglandAlexey CherepanovMiles CongreveA. Cowen-RiversAndrew CowieMichael FigurnovFabian B FuchsHannah GladmanRishub JainYousuf A. KhanCaroline M R LowKuba PerlinAnna PotapenkoPascal SavySukhdeep SinghA. SteculaAshok ThillaisundaramCatherine TongSergei YakneenEllen D. ZhongMichal ZielinskiAugustin ŽídekV. BapstPushmeet KohliMax JaderbergD. HassabisJ. Jumper
Nature Published 2024/11/27
Synthesis of high-performance supercapacitor electrode materials by hydrothermal route based on ZnSe/MnSe composite
Mukhtiar Hussain;B. M. AlotaibiA. AlrowailyHaifa A. AlyousefM. AlotibyM. AbdullahA. Al-sehemiA. HenaishZubair AhmadS. Aman
Journal of Physics and Chemistry of Solids Published 2024/02/01
Where the rubber meets the road: Emerging environmental impacts of tire wear particles and their chemical cocktails
P. Mayer;Kelly D. MoranEzra L. MillerS. BranderStacey L. HarperManuel García-JaramilloV. Carrasco-NavarroK. HoRobert M. BurgessLeah M. Thornton HamptonE. GranekMargaret McCauleyJ. McIntyreEdward P. KolodziejXimin HuA. WilliamsBarbara A. BeckinghamMiranda E. JacksonRhea D Sanders-SmithChloe L. FenderGeorge A KingMichael A. BollmanS. KaushalB. CunninghamS. HuttonJackelyn LangHeather V GossSamreen SiddiquiR. SuttonDiana LinM. Mendez
The Science of the total environment Published 2024/03/01
Chitosan-nano CuO composite for removal of mercury (II): Box-Behnken design optimization and adsorption mechanism.
G. Al-Hazmi;AbdulAziz A. AlayyafiM. El‐DesoukyA. A. El-Bindary
International journal of biological macromolecules Published 2024/01/01
A new antibiotic traps lipopolysaccharide in its intermembrane transporter
Karanbir S. Pahil;M. S. GilmanVadim BaidinThomas ClairfeuillePatrizio MatteiChristoph BieniossekFabian DeyDieter MuriRemo BaettigMichael A LobritzKenneth A BradleyA. KruseD. Kahne
Nature Published 2024/01/03

Summary:

These findings identify an unusual mechanism of lipid transport inhibition, reveal a druggable conformation of the Lpt transporter and provide the foundation for extending this class of antibiotics to other Gram-negative pathogens.

Guava seed activated carbon loaded calcium alginate aerogel for the adsorption of diclofenac sodium: Characterization, isotherm, kinetics, and optimization via Box-Behnken design.
G. Al-Hazmi;AbdulAziz A. AlayyafiM. El‐DesoukyA. A. El-Bindary
International journal of biological macromolecules Published 2024/02/01
Advances in silver nanoparticles: a comprehensive review on their potential as antimicrobial agents and their mechanisms of action elucidated by proteomics
Adriana S. Rodrigues;J.G.S. BatistaMurilo Á. V. RodriguesV. ThipeL. A. MinariniPatricia S. LopesA. B. Lugão
Frontiers in Microbiology Published 2024/07/31

Summary:

The proteomic mechanisms by which AgNPs exert their antimicrobial effects are investigated, with a special focus on their activity against planktonic bacteria and in biofilms and the issue of resistance to antibiotics is addressed.

Advanced microcrystalline nanocellulose-based nanofiltration membranes for the efficient treatment of wastewater contaminated with cationic dyes
Ayman K. El‐Sawaf;A. A. NassarA. A. El Aziz ElfikyMahmoud F. Mubarak
Polymer Bulletin Published 2024/05/14
Elimination of Ni(II) from wastewater using metal-organic frameworks and activated algae encapsulated in chitosan/carboxymethyl cellulose hydrogel beads: Adsorption isotherm, kinetic, and optimizing via Box-Behnken design optimization.
G. Al-Hazmi;Nadia H. ElsayedJ. AlnawmasiKhadra B. AlomariA. H. AlessaShareefa A AlshareefA. A. El-Bindary
International journal of biological macromolecules Published 2025/01/01
Coordination environment dominated catalytic selectivity of photocatalytic hydrogen and oxygen reduction over switchable gallium and nitrogen active sites
Chunqiang Zhuang;Weiming LiYuan ChangShijie LiYihong ZhangYuanli LiJunfeng GaoGe ChenZhenhui Kang
Journal of Materials Chemistry A
Advancements in nanomaterials for nanosensors: a comprehensive review
Moustafa A. Darwish;Walaa Abd‐ElaziemA. ElsheikhAbdelhameed A. A. Zayed
Nanoscale Advances Published 2024/05/24
Complete biosynthesis of the potent vaccine adjuvant QS-21
Laetitia B B Martin;Shingo KikuchiM. RejžekC. OwenJames ReedA. OrmeR. MisraAmr El-DemerdashLionel HillHannah HodgsonYuzhong LiuJay D. KeaslingRobert A. FieldA. TrumanA. Osbourn
Nature Chemical Biology Published 2024/01/26

Summary:

The biogenic origin of the acyl chain is reported, the series of enzymes required for its synthesis and addition and the entire 20-step pathway in tobacco are characterized and reconstitute the entire 20-step pathway in tobacco, thereby demonstrating the production of QS-21 in a heterologous expression system.

Structure-Property-Performance Relationship of Vanadium- and Manganese-based Metal-Organic Frameworks and their derivatives for Energy Storage and Conversion Applications
Reza Abazari;Soheila SanatiA. NanjundanQiyou WangDeepak P. DubalMin Liu
Journal of Materials Chemistry A
Abundant ammonia and nitrogen-rich soluble organic matter in samples from asteroid (101955) Bennu
D. Glavin;J. DworkinC. AlexanderJ. AponteA. BaczynskiJ. J. BarnesH. A. BechtelE. L. BergerAaron S. BurtonP. CaselliAngela H ChungS. ClemettG. CodyG. DominguezJ. ElsilaKendra K. FarnsworthD. FoustoukosKatherine H. FreemanY. FurukawaZ. GainsforthH. GrahamT. GrassiB. M. GiulianoV. HamiltonP. HaenecourP. R. HeckA. HofmannC. HouseYongsong HuangH. KaplanL. KellerBumsoo KimT. KogaM. LissH. MclainM. A. MarcusM. MatneyT. McCoyOphélie M McIntoshA. MojarroH. NaraokaA. NguyenM. NuevoJ. NuthY. ObaE. ParkerT. PeretyazhkoS. SandfordEwerton SantosP. Schmitt-KopplinF. SeguinD. SimkusAnique ShahidY. TakanoK. Thomas-KeprtaHavishk TripathiGabriella WeissYuke ZhengN. LunningK. RighterH. C. ConnollyD. Lauretta
Nature Astronomy Published 2025/01/29
Nanotubes/nanorods-like structures of La-doped ZnO for degradation of Methylene Blue and Ciprofloxacin
A. Soares;F. P. AraújoJ. OsajimaY. GuerraB. C. VianaR. Peña-Garcia
Journal of Photochemistry and Photobiology A: Chemistry Published 2024/01/01
Rationally designed dual cocatalysts on ZnIn2S4 nanoflowers for photoredox coupling of benzyl alcohol oxidation with H2 evolution
Yu Wei;Yuzheng WuJun WangYonghui WuZonglin WengWei-Ya HuangKai YangJia-Lin ZhangQi LiKangqiang LuBin Han
Journal of Materials Chemistry A
Enhancing photocatalytic performance of Co-TiO2 and Mo-TiO2-based catalysts through defect engineering and doping: A study on the degradation of organic pollutants under UV light
Mubarak A. Eldoma;Saleh O. AlaswadMohamed A. MahmoudIsam Y. QudsiehMohamed HassanOmer Y. BakatherGaber A. ElawadiA. F. AbouatiaaMohammad S. AlomarMustafa S. ElhassanIslam G. AlhindawyZeyad M. Ahmed
Journal of Photochemistry and Photobiology A: Chemistry Published 2024/01/01
Strong synergistic effects between P/N-containing supramolecular microplates and aluminum diethylphosphinate for fire-retardant PA6
Yixia Lu;Jiabing FengDeqi YiHongyan XieZhiguang XuCheng-Fei CaoS. HuoHao WangP. Song
Composites Part A: Applied Science and Manufacturing Published 2024/01/01
Chemistry, bioavailability, bioactivity, nutritional aspects and human health benefits of polyphenols: A comprehensive review.
M. El‐Saadony;Tao YangA. SaadS. S. AlkafaasS. S. ElkafasGehad S. EldeebDina Mostafa MohammedH. SalemSameh A. KormaSamah A. LoutfyMohammad Y. AlshahranAhmed Ezzat AhmedWalid F. A. MosaTaia A. Abd El-MageedAtef F. AhmedMohamed A. FahmyMarawan K. El-TarabilyReda M. MahmoudSynan F. AbuQamarKhaled A. El-TarabilyJ. M. Lorenzo
International journal of biological macromolecules Published 2024/07/01

Summary:

The mechanisms by which complex polyphenols act as antioxidative, anti-inflammatory, and anticancer agents have been discussed and their role in food enrichment is discussed.

The Enigma of Methanol Synthesis by Cu/ZnO/Al2O3-Based Catalysts.
A. Beck;Mark A NewtonLeon G A van de WaterJ. V. van Bokhoven
Chemical reviews Published 2024/04/02
Enhanced photocatalytic activity of green synthesized zinc oxide nanoparticles using low-cost plant extracts
Sahar A. Mousa;D. A. WissaH. HassanA. A. EbnalwaledS. A. Khairy
Scientific Reports Published 2024/07/19
Stress relaxation properties of calcium silicate hydrate: a molecular dynamics study
Zhicheng Geng;Shengwen TangYang WangH. AZhen HeKai WuLei Wang
Journal of Zhejiang University-SCIENCE A Published 2024/02/01
Carbon Dot Based Carbon Nanoparticles as Potent Antimicrobial, Antiviral, and Anticancer Agents
N. Hussen;A. HasanYar Muhammed FaqiKhedrA. BogoyavlenskiyA. BhatJ. Jamalis
ACS Omega Published 2024/02/22

Summary:

The antimicrobial applications of C-dots as antibacterial, antifungal, and antiviral agents both in vivo and in vitro are discussed and the anticancer activity displayed by C-dots is thoroughly examined.

Core-shell flame retardants based on Chitosan@MMT coated ammonia polyphosphate for enhancing flame retardancy of polyurethane
Con Shi;Mei WanJiahao DuanXiaodong QianHonglei CheJian LiFei RenJunyi LiLing Yang
Composites Part A: Applied Science and Manufacturing Published 2024/01/01
Bright and stable monomeric green fluorescent protein derived from StayGold.
Hanbin Zhang;Gleb D LesnovO. SubachWenhao ZhangTatyana P KuzmichevaA. VlaskinaV. SamyginaLiangyi ChenXianxin YeA. NikolaevaAzat GabdulkhakovS. PapadakiWenming QinV. BorshchevskiyMaxim M. PerfilovA. S. GavrikovMikhail DrobizhevA. MishinKiryl D. PiatkevichF. Subach
Nature methods Published 2024/02/26

Summary:

Systematic benchmarking of mBaoJin against popular green fluorescent proteins and other recently introduced monomeric and pseudomonomeric derivatives of StayGold established mBaoJin as a bright and photostable fluorescent protein, exhibiting rapid maturation and high pH/chemical stability.

Nanocrystal Assemblies: Current Advances and Open Problems.
Carlos L Bassani;Greg van AndersU. BaninD. BaranovQian ChenMarjolein DijkstraM. DimitriyevEfi EfratiJ. FaraudoO. GangN. GastonR. GolestanianG. I. Guerrero-GarcíaMichael GruenwaldA. Haji-AkbariMaria IbáñezM. KargTobias KrausByeongdu LeeR. V. Van LehnR. MacfarlaneB. MognettiA. NikoubashmanSaeed OsatO. PrezhdoGrant M. RotskoffL. SaizAn-Chang ShiS. SkrabalakI. SmalyukhMario TagliazucchiD. TalapinA. TkachenkoSergei TretiakD. VakninA. Widmer‐CooperGerard C. L. WongXingchen YeShan ZhouE. RabaniMichael EngelA. Travesset
ACS nano Published 2024/05/30
Effective synthesis and characterization of citric acid cross-linking of modified ferrous metal-organic framework and chitosan nanocomposite sponge for Th(IV) elimination: Adsorption isotherms, kinetic analysis, and optimization by Box-Behnken design.
G. H. Al-Hazmi;Lamia A. AlbedairRaedah A. S. AlatawiA. M. AlsuhaibaniA. A. H. BukhariA. A. El-Bindary
International journal of biological macromolecules Published 2024/10/01
The Second Laser Revolution in Chemistry: Emerging Laser Technologies for Precise Fabrication of Multifunctional Nanomaterials and Nanostructures
A. A. Manshina;I. TumkinE. KhairullinaM. MizoshiriAndreas OstendorfS. KulinichS. MakarovA. KuchmizhakE. L. Gurevich
Advanced Functional Materials Published 2024/07/26
Hierarchical biocide-free silicone/graphene-silicon carbide nanocomposite coatings for marine antifouling and superhydrophobicity of ship hulls
M. S. Selim;A. M. AzzamS. A. HigazyM. ShenashenA. ElmarakbiM. EbaraS. El‐Safty
Chemical Engineering Science Published 2024/02/01
Rational engineering of S-scheme CeO2/g-C3N4 heterojunctions for effective photocatalytic destruction of rhodamine B dye under natural solar radiations
Ali Alsulmi;Nagy N. MohammedMohamed M. HassanMohamed A. EltawilA.E. AminMichel FahmyAyman SultanM. A. Ahmed
Colloids and Surfaces A: Physicochemical and Engineering Aspects Published 2024/05/01
Facile synthesis of new metal-organic framework/chitosan composite sponge for Hg(II) removal: Characterization, adsorption efficiency, and optimization using Box-Behnken design.
Zehba A. Al‐Ahmed;Mona AlhasaniM. AljohaniRazan M. SnariHawra A. AlghashamN. M. AlatawiA. KeshkNashwa M. El‐Metwaly
International journal of biological macromolecules Published 2024/01/01
Size exclusion chromatography of biopharmaceutical products: From current practices for proteins to emerging trends for viral vectors, nucleic acids and lipid nanoparticles.
V. D’Atri;Mateusz ImiołekColette QuinnAbraham FinnyM. LauberS. FeketeD. Guillarme
Journal of chromatography. A Published 2024/04/01

Summary:

This review discusses the use of SEC in multidimensional setups and shows some of the most recent advances at the preparative scale, and the possibility of SEC for the characterization of new modalities is also reviewed.

SiO2 assisted Cu0–Cu+–NH2 composite interfaces for efficient CO2 electroreduction to C2+ products
Zi-Yang Zhang;Hao TianHan JiaoXin WangLeiming BianYuan LiuNithima KhaorapapongY. YamauchiZhong-Li Wang
Journal of Materials Chemistry A
Exploring the potential of marine natural products in drug development: A comprehensive review
A. Banday;Noor ul AzhaRehana FarooqSourab A. SheikhMuzafar A. GanieMohammad N. ParrayHina MushtaqIqra HameedM. A. Lone
Phytochemistry Letters Published 2024/02/01

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